Shewanella sediminis: Ssed_4118
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Entry
Ssed_4118 CDS
T00596
Name
(GenBank) putative TIM-barrel protein, nifR3 family
KO
K05540
tRNA-dihydrouridine synthase B [EC:1.-.-.-]
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sse03016
]
Ssed_4118
Transfer RNA biogenesis [BR:
sse03016
]
Prokaryotic type
tRNA modification factors
Dihydorouridine synthases
Ssed_4118
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dus
His_biosynth
DHO_dh
SOR_SNZ
NanE
IMPDH
Motif
Other DBs
NCBI-ProteinID:
ABV38722
UniProt:
A8G0U9
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All DBs
Position
5036801..5037769
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AA seq
322 aa
AA seq
DB search
MQIGPYQLKNRLIVAPMAGVTDQPFRNLCLRYGAAMAVSEMLSSNPDVWDTDKSRQRMSH
AGEDGIRSVQIAGADPELMANAAVVNVQQGAQIIDINMGCPAKKVNRKLAGSALLQDPVQ
VKAILQAVVAAVDVPVTLKIRTGWAPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGN
AEYDTIKAIKKNVSIPVVANGDIVTPEKARFVLDQTGADALMIGRGAQGRPWIFREIQHY
LETGNKLAPVEMDEKRLVMLEHLKNLYALYGEYKGIRFARKHVGWYLDQDEQRPFRAEFN
RLETVEEQGSMVERYFDEIAQN
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgcagattggaccctatcaactgaaaaaccggttgatcgtggcaccaatggcaggtgtc
acagaccaaccctttagaaatctatgtcttcgttatggtgcagccatggcggtgtcggag
atgctttcgtcgaatcctgatgtttgggataccgataagagccgccagcgcatgagtcat
gctggtgaagatgggatacgctcagtacaaatagcaggtgccgatcctgagttaatggcc
aatgccgccgttgtcaacgtacaacaaggggcacagatcattgatatcaatatgggttgc
cctgcgaagaaagtgaatagaaagctagctggttcagctttactgcaagaccctgtgcag
gtaaaagcaattttacaagccgtggttgccgcagtggatgtaccggtaacactgaaaatt
cgaactggatgggctccggagcataggaatggtgttcaaatcgcccagatagccgaagat
tgtggtattgcctcattagccgttcacggcagaaccaggcagtgcatgtacaagggaaat
gccgagtacgacacgattaaagctattaaaaagaatgtctcgatccctgttgttgctaac
ggagatattgtcactcctgaaaaagcacgttttgtgttagatcagaccggtgccgatgct
ctcatgataggtcggggtgctcaaggaaggccttggattttccgagaaattcaacattat
ctggaaacgggtaataagctagcgcctgttgagatggatgaaaagcgtcttgtgatgctg
gaacatcttaaaaacttatatgctctgtatggtgaatataagggtatccgtttcgctaga
aaacatgttggatggtatttggaccaagatgaacagcgtccattccgggccgaatttaat
cggctggaaactgttgaagaacaaggttccatggtggaacgctattttgatgaaattgca
cagaattaa
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