Solea senegalensis (Senegalese sole): 122781912
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Entry
122781912 CDS
T07721
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ssen00536
]
122781912 (col13a1)
Glycosaminoglycan binding proteins [BR:
ssen00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122781912 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122781912
NCBI-ProteinID:
XP_043901946
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Position
LG15:1450021..1552537
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AA seq
675 aa
AA seq
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MERDQDQKRTVRSHKLRQNWTWICRDLSCVALCVALSVLCLGVCVVVLVRASELQSRVES
LEQQQRDARVPAWSVSLEQVEPVLLSRLDQILDEKLAARLPKTREVREAPHSCLCPPGPP
GPPGRAGFPGDKGSMGIPGRMGLKGRAGDKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPG
PIGLDGKPGQNGPKGDMGHRGVKGQPGEPGLKGEKGVCGDYAHRKRRIVQPCVGQSATQG
EPGAQGPPGPPGPPGPPGNAGLNGSQGKPGEPGKPGKDPRLLPGLKGEPGVPGQKGGRGD
VGPPGPEGPQGVKGDRGTEGEKGEPSSAAQGIKGEPGSPGLPGLTGLKGEKGDHGVKGEG
GPEGPAGPRGPPGPTGEPGKAEIQNENDIRNIPLMGPPGLPGPPGIPGSPGIKGEVGLPG
PPGLDGEKGPRGKPGEPGPGGPAGPLGPRGEDGAMGFPGPKGDLGPPGSPGLDGPTGEKG
ATGAPGPIGLPGSMGLKGEPGETARSEMVYGPPGPPGPPGPVGPAGSQGFSGPKGEPGIG
IKGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVSGPAGPKGERGEKGDAG
LPGPTGPQGIPGLVGPQGFKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVP
GCWNKGQHPFQLAKK
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggatcaggatcagaagcggaccgtgcggagtcataaactgcggcagaactgg
acctggatctgcagggatttgtcgtgcgtcgcgctgtgcgtggcgctgtcggtgctatgc
ctcggcgtgtgcgtggtggttctggtgcgcgcctcggagctgcagtcccgcgtggagagt
ctggagcagcagcagcgggacgcgcgggtccccgcgtggagcgtctctctggagcaggtg
gaacccgtgctcctgagcagactggaccagattctggacgagaaactcgcagctcgacta
ccaaagacacgggaggtgagggaagctcctcacagctgcttatgtcctccaggtcctcca
ggtcctcctggacgagcaggctttccgggtgacaaaggcagtatgggaattcctggcaga
atgggtttgaaaggacgagcaggggacaagggagctccaggagaaccaggtctgtccatc
atcggaccaagaggacctcctggacaaccaggaacccgaggcttcccaggctttcccggt
ccgatcgggttggatggcaaacctggacagaacggaccgaagggagacatgggtcaccgt
ggtgtgaaaggacagccaggtgaacccggactcaaaggagagaagggcgtgtgtggagac
tacgcccaccggaagcggcgtattgttcagccgtgtgtcggacagtcggccacacagggc
gagcctggagcgcagggaccgccgggacctcctggaccccccggaccaccggggaacgca
ggcttgaacggctcacagggtaaacctggtgagccaggaaaaccaggaaaagacccgagg
cttttaccaggactgaagggcgagcctggtgttccagggcagaagggcggtcgaggagac
gtcggtccaccaggtcctgaaggaccacagggagttaaaggagaccgaggcactgaggga
gagaagggcgagccgagttctgcggcccaaggtatcaaaggagagccaggttcaccagga
ctgccgggactaaccggactcaagggagaaaagggagaccatggagtaaagggggaggga
ggtcctgaaggcccagctgggccgagaggtccaccaggtccgaccggagagcctggaaaa
gccgagatccagaatgaaaatgatattcgtaacatacctttaatgggtcctcctggatta
cctggacctccagggatccccggttctcctggtatcaagggtgaagttggtctaccaggt
ccaccaggactggacggcgagaagggacccagagggaaacctggagagcccggtcctgga
ggcccagctggtcctttaggtcccagaggggaggacggtgccatgggcttcccaggaccc
aaaggagacctgggtccacctggatcacctggtctagatggccctacgggtgaaaagggg
gccacaggagccccgggccctattggattacctggctcaatgggtctgaaaggtgaacct
ggagaaacagcgaggtcagaaatggtctatggtcctccaggaccaccaggacctccagga
ccagttggaccagcaggatcccaggggttttcagggcctaagggagagccaggcatcggc
atcaaaggagaaaagggagccacgggtcaaaagggcgacaaaggagaccgaggccatctt
ggactgcctggggctcatgggttagacggcagaccgggtccagtgggtctcataggacca
gcaggtgtttcaggaccagcaggaccaaagggagagaggggtgaaaaaggagacgcagga
ttaccaggaccaactgggcctcaaggcatccctggtttagtaggaccacaaggattcaaa
gggaaccggggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagac
caaggagcacctggattagatgccccgtgtccgttgggtgacgatggtttacctgtacca
ggatgttggaataaaggccagcatcctttccaactggctaagaagtag
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