Sclerotinia sclerotiorum: SS1G_00071
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Entry
SS1G_00071 CDS
T01071
Name
(RefSeq) conserved hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SS1G_00071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssl03041
]
SS1G_00071
03009 Ribosome biogenesis [BR:
ssl03009
]
SS1G_00071
Enzymes [BR:
ssl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS1G_00071
Spliceosome [BR:
ssl03041
]
Complex A
U1 snRNP components
U1 related factors
SS1G_00071
Complex B
SS1G_00071
Ribosome biogenesis [BR:
ssl03009
]
Eukaryotic type
Pre-60S particles
Helicases
SS1G_00071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
5494656
NCBI-ProteinID:
XP_001597985
UniProt:
A7E449
A0A1D9PZR4
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MSYGGGYGGGRGGGNGYGNGDSSYGRGNSYSNGYSNGGSNGYSGGGGGGYGGGRGGSGGG
NVNGYSGGGGGYGGGGGYGGGGGAGGDRMNNLGANLQKQNWDLNTLPKFEKSFYKEDPVV
AARSEEDVAKFRAQHNIAVQGPNIPKPVETFDEAGFPAYVMTEVKAQGFPAPTPIQSQGW
PMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQ
EITKFGKSSRIRNTCVYGGVPKGGQIRDLAKGVEVCIATPGRLIDMIESGKTNLRRVTYL
VLDEADRMLDMGFEPQIRKILGQIRPDRQTCMWSATWPKEVRALASDYLNDFIQVNIGSL
ELSANHRITQIVEVVSEFEKRDKMTKHLEKIMEDKDNKILIFTGTKRVADDITRFLRQDG
WPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDY
IHRIGRTGRAGQKGTAITLFTTDNQKQARDLVNVLTEAKQVIDPRLAEMTRFGGGGGGRG
YGGRGYGGGRGRGGGGNFSSSNAAPLGGGRRW
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatggaggtggatatggtggtggccgtggtggcggtaatgggtatggaaatgga
gattcctcatatggcagaggcaactcttactccaatggatattcaaatggtggatctaat
ggatactctggaggcggtggaggtggttacggaggtggtagaggcggcagtggtggtgga
aatgtaaacggctactccggaggtggtggcggctacggagggggcggtggatacggtggt
ggtggtggtgctggtggagatcgcatgaacaaccttggtgctaaccttcaaaaacaaaac
tgggatctcaacactctgccaaagttcgagaaatctttctacaaagaagacccagttgtc
gctgctcgttcagaagaagatgttgctaaattcagagctcaacacaacattgccgttcaa
ggtccaaacattccaaaacctgtcgagaccttcgacgaggccggatttcctgcatacgtc
atgacagaagtcaaggctcaaggtttcccagcacctactccaattcaatctcaaggttgg
cctatggctttatctggacgtgatgttgtcggtattgccgaaaccggttccggaaagact
ctcacctactgtctcccagcaattgttcacatcaacgcacaaccacttctcgctcctggt
gacggtccaattgttctggtccttgcacctacccgtgagttggctgtccaaattcaacaa
gaaattaccaaattcggaaagtcttcccgcatccgcaacacctgtgtttacggaggtgtt
cctaaaggtggtcaaatccgtgatctcgccaagggtgttgaggtctgcattgctactcca
ggtcgtctgattgatatgatcgagtctggaaagaccaacctccgtcgtgttacgtacctt
gttctcgatgaggctgatcgtatgttggacatgggttttgaaccccaaatccgtaagatt
cttggacagatcagaccagacaggcaaacttgcatgtggtctgctacttggccaaaggaa
gttagagccctcgcctctgattacttgaatgatttcattcaggtcaacattggttcattg
gagctctccgctaaccacagaattactcaaatcgtcgaagttgtttctgagttcgagaaa
cgcgataagatgaccaagcatttggaaaaaattatggaagacaaggataacaagattctg
atcttcacaggaaccaaacgtgttgctgacgatatcacacgcttcctcagacaagatgga
tggccggcgctttccattcacggtgataaacaacaaaatgagcgtgattgggtattgaat
gaatttaagactggcaagagcccgatcatggttgctactgatgtagcttcgcgtggtatt
gatgtccgaaacattactcatgtgttcaactatgactaccctaacaattcggaggattat
atccatcgtattggtcgtacaggtcgtgctggacaaaagggaactgcaatcactctcttc
accactgataatcaaaagcaggcccgtgatctcgtgaacgttcttactgaagctaagcag
gtcattgatcctcgccttgctgagatgaccagatttggaggtggtggcggtggtagagga
tatggtggacgtggttacggcggtggccgtggacgtggtggcggtggcaatttctcatct
tctaacgctgctcctttaggtggaggcagacgttggtaa
DBGET
integrated database retrieval system
