Streptomyces spongiicola: DDQ41_23480
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Entry
DDQ41_23480 CDS
T06937
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DDQ41_23480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_23480
Enzymes [BR:
sspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DDQ41_23480
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DDQ41_23480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWK11382
UniProt:
A0A2S1Z4Z1
LinkDB
All DBs
Position
complement(5347563..5348447)
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AA seq
294 aa
AA seq
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MTPITEVEGRRLALSNLDKVLHPATGTTKGEVLHYYAGIADAILTHLRDRPLSFLRYPDG
PEGQLFFTKNPPPGTPDWVQVAEVPRSSRETGEQVVVQDLPSLMWAANLVVEFHTPQWRI
DRPARADRMVLDLDPGAPATVVECCRVALWLRERLAADGLDAYAKTSGSKGLHLLVPLDP
APSAEVSAYARGLAVEAEAELGGLVVHRMARALRPGKVFVDHSQNAAAKTTATPYTLRAR
AEPTVSAPVTWDEVEGCGAPGDLVLLLGDMPGRLERHGDLLAPLADPASAGVLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccatcacagaggtggaggggcggcgcctggccctcagcaacctggacaaggtc
ctccatccggccaccgggaccaccaagggcgaggtgctgcactactacgccggcatcgcg
gacgcgatcctcacgcatctgcgggaccggccgctgtccttcctgcgctaccccgacggc
cccgagggccagctgttcttcaccaagaacccgccccccggcacgcccgactgggtgcag
gtcgcggaggtgccgcgctcctcccgggagaccggcgagcaggtcgtcgtacaggacctg
ccctcgctgatgtgggcggcgaacctggtcgtggagttccacaccccccagtggcggatc
gaccggcccgcccgggccgaccggatggtcctcgacctcgaccccggggcccccgcgacg
gtcgtggagtgctgccgggtggcgctgtggctgcgggaacgactggccgccgacggtctg
gacgcgtacgcgaagacctcgggctcgaaggggctgcacctgctggtgccgctggacccg
gccccctcggcggaggtctcggcctacgccaggggcctggccgtggaggcggaggcggaa
ctcggggggctggtcgtgcaccggatggcccgcgctctgcgcccggggaaggtcttcgtc
gaccacagccagaacgccgcggccaagaccaccgccacgccgtacaccctgcgcgcccgc
gccgagccgaccgtgtccgcgcccgtcacctgggacgaggtcgaggggtgcggggcaccc
ggggacctggttctgctcctgggcgacatgccggggaggctcgaacggcacggggacctg
ctcgcgccgctcgccgacccggcgtcggcgggtgtgctgccttga
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