Streptomyces sp. SirexAA-E: SACTE_3517
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Entry
SACTE_3517 CDS
T01601
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ssx
Streptomyces sp. SirexAA-E
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssx03019
]
SACTE_3517
Enzymes [BR:
ssx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SACTE_3517
Messenger RNA biogenesis [BR:
ssx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SACTE_3517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
PhoH
DUF6139
NTPase_1
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEN11373
UniProt:
G2NNW7
LinkDB
All DBs
Position
complement(3923177..3927097)
Genome browser
AA seq
1306 aa
AA seq
DB search
MSTSFADLQSQLGQLSLRDAHRLGRRLEGARRIRKPEARQSVLDEISAEAGKAAERLAGR
AARMPALSYPEQLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERVADELKTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILLAEIQ
TDRELLAYDTIIIDEAHERSLNIDFLLGYLARLLPERPDLKVVVTSATIDPERFAKHFGE
APIVEVSGRTYPVEVRYRPLLEEDSSDADRDQITAICDAVDELGHEAPGDVLVFLSGERE
IRDTADALNKRNLRNTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLTRPE
FTDPEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGALDPQEKDP
RKRLTPLGRKLSQLPVDPRLARMVVEADRNGCVREVMVIAAALSIQDPRERPAEKQTQAD
QHHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIYAQLR
SVARQMGIQLNDEDAPEQSVHTSLLAGLLSHIGLKDTEKNEYLGARNAKFALFPGSALFK
KQPRFVMSAELVETSRLWARVNAKVEPEWIEPLAQHLLKRTYSEPHWEKDQAAVMAYERV
TLYGVPIVAQRKINFGRIDQEASRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHR
ARRRDILVDDETLFDFYDRRIPEHIVSGAHFDSWWKHKRREEPDALDFERSMLINEKASA
VTKDDYPDSWRQGKLKFRVTYQFEPGADADGVTVHIPLQVLNQVTPEGFDWQIPGLREEV
VTELIRSLPKPIRRHYVPAPNYATKFLDRAVPLQEPLPLTLARELQRMVGVPVTADDFDL
SRVPDHLKITFRIVDERRRKVAEDKDLEALKLSLRPKARQALSKAAAATAGPSGESVERS
GLTDWTIGTLGRVFETRRAGQPVKAYPALVDQGETVAVRLFDTEAEQQQAMWRGTRKLIM
LNIPVNPSKFASDTLSNQQKLALSRNPHGSVQALFDDCATAAADRLIAAHGGPAWDEAAF
RTLYEKVRADLVDLTVRTIGQVQQILAAWQACERRLKSTGSLVLINNVTDVREHLARLVP
PGFVTATGLRRLPDLMRYLVAEDRRLQQMPTNVQRDTTRMEKVHEMQDEYAWLLEQLPQG
RPVPQEVLDIRWMIEELRVSYFAHALGTSQPVSDKRIVKAIDAAAP
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttcctttgccgacctccagtcccagctcgggcagctctcgctccgcgacgcg
caccggctcggccggcgtctcgagggtgcccgccgcatccgcaagcccgaggcccgccag
tccgtgctggacgagatctccgccgaggccgggaaggcggccgagcggctcgcggggcgc
gccgcgcggatgcccgctctgtcgtacccggaacagctcccggtcagtcagaagaaggac
gagatcctggaggcgatacgcgaccaccaggtcgtgatcgtcgccggggagacaggctcg
ggcaagaccacgcagatccccaagatctgcatggagctcgggcgcggggtccggggcatg
atcgggcacacccagccccgccggatcgcggcccgcacggtggccgagcgggtcgcggac
gagctgaagaccccgctcggcgaggccgtcggctggaaggtgcgcttcaccgaccaggtg
aacccggacgcgacgttcgtgaagctgatgacggacggcatcctcctggccgagatccag
acggaccgcgaactgctcgcgtacgacacgatcatcatcgacgaggcccacgagcggtcg
ctgaacatcgacttcctgctgggctatctcgcccggctgctgcccgagcgccccgatctg
aaggtcgtcgtcacctccgcgaccatcgacccggaacgcttcgccaagcacttcggcgag
gccccgatcgtcgaggtcagcgggcgtacgtacccggtcgaggtgcgctaccggccgctc
ctggaggaggacagcagcgacgccgaccgcgaccagatcaccgcgatctgcgacgccgtc
gacgagctgggccacgaggccccgggcgacgtcctggtcttcctctccggcgagcgggag
atccgcgacacggcggacgcgctgaacaagcggaacctgcgcaacaccgaggtgctcccc
ctctacgcgcgcctctcgcacgccgagcagcaccgggtcttccagcgccacacgggccgc
aggatcgttctggcgacgaacgtcgcggagacctcgctgaccgtcccgggcatcaagtac
gtcatcgacccgggcaccgcgcgcatctcccgctacagccaccgcaccaaggtccagcgg
ctgccgatcgagccggtgtcgcaggccagcgccaaccagcgcaagggccgttgcggccgt
acgtcggacggcatctgtatccggctgtactccgaggacgacttcctcacgcgtccggag
ttcaccgaccccgagatcctgcggacgaacctcgcctccgtcatcctccagatgaccgcg
gccggcctcggtgacatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtccagctgctccaggagctcggcgcgctggacccgcaggagaaggacccc
aggaagcgcctcaccccgctgggccgcaagctctcccagctgcccgtggacccgcgcctg
gcccgcatggtggtggaggccgaccgcaacggctgcgtccgcgaggtcatggtgatcgcc
gccgcgctctccatccaggacccgcgcgagcgccccgcggagaagcagacccaggccgac
cagcaccacgcccgcttcaaggacgagacgtcggacttcctggcgtacctgaacctgtgg
cgttacgtccgggagcagcagaaggagcgcggatcctccagcttccgccggatgtgcaag
caggagtacctcaacttcctgcgcatccgcgagtggcaggacatctacgcgcagctgcgc
tcggtggccaggcagatgggcatccagctgaacgacgaggacgcgccggagcagtcggtg
cacacctcgctgctggccggtctgctgtcgcacatcgggctgaaggacaccgagaagaac
gaatacctgggggcccgcaacgccaagttcgcgctcttccccggatcggcgctgttcaag
aagcagccgcgcttcgtgatgtcggccgagctggtcgagacctcgcggctctgggcacgg
gtcaatgcgaaggtcgagccggagtggatcgagccgctcgcccagcacctgctgaagcgc
acgtacagcgagccgcactgggagaaggaccaggcagcggtcatggcgtacgagcgggtc
acgctctacggggtaccgatcgtcgcccagcgcaagatcaatttcggccggatcgaccag
gaggcgtcccgcgacctgttcatccgcaacgccctggtcgagggcgactggcgcacccat
catcagttcttccatgacaatcgcaaactgctcggcgaggtcgaggagttggagcaccgc
gcccggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctacgacaggcgg
atcccggaacacatcgtctccggggcgcacttcgactcctggtggaagcacaagcgccgc
gaggagccggacgcgctcgacttcgagcggtccatgctcatcaacgagaaggcctcggcc
gtcaccaaggacgactaccccgactcctggcggcaggggaagctcaagttccgggtgacc
taccagttcgagccgggcgcggacgcggacggcgtgaccgtccacatcccgctccaggtg
ctcaaccaggtcaccccggaaggcttcgactggcagatccccggcctgcgcgaggaggtg
gtcaccgaactgatccgctcgctgcccaagccgatccgccggcactacgtcccggccccg
aactacgcgacgaagttcctcgaccgcgcggtgccgttgcaggagcccctgccgctcacg
ctcgcccgtgagctccagcggatggtcggcgtgccggtgacggcggacgacttcgacctg
tcccgcgtcccggaccacctcaagatcaccttccggatcgtggacgagcggcgccgcaag
gtggccgaggacaaggacctggaggcgttgaagctctcgttgcgccccaaggcccgtcag
gcgctctccaaggccgcggcggcgaccgcgggaccgtcgggcgagtccgtcgagcgctcg
gggctcacggactggacgatcggcaccctgggccgcgtcttcgagacccgccgggccggc
cagccggtcaaggcctacccggccctcgtcgaccagggcgagaccgtggccgtacggctc
ttcgacacggaggccgagcagcagcaggcgatgtggcggggcacccggaagctgatcatg
ctcaacatcccggtgaacccgtcgaagttcgcctcggacacgctctccaaccagcagaag
ctcgcgctgtcccgcaatccgcacggctccgtccaggcgctgttcgacgactgcgcgacg
gcggcggcggaccggctgatcgcggcccacggcggcccggcctgggacgaggcggcgttc
cggacgctgtacgagaaggtccgcgccgacctggtggacctgaccgtccgcacgatcggc
caggtgcagcagatcctggcggcctggcaggcctgcgagcgccggctgaagagcaccggc
agtctggtcctgatcaacaacgtcacggacgtacgggagcacctggcccgtctcgtcccg
cccgggttcgtcaccgcgaccggactgcgcaggctgcccgacctgatgcgctacctggtc
gccgaggaccgccggctccagcagatgccgacgaacgtccagcgcgacaccacgcgcatg
gagaaggtccacgagatgcaggacgagtacgcctggctgctggagcagctgccgcagggg
aggcccgtaccgcaggaggtgctggacatccgctggatgatcgaggagctgcgggtgagc
tacttcgcccatgcgctgggcacgtcccagccggtctccgacaagcggatcgtcaaggcg
atcgacgccgcggcaccgtga
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