Sphingobium sp. SYK-6: SLG_36680
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Entry
SLG_36680 CDS
T01622
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ssy
Sphingobium sp. SYK-6
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssy03032
]
SLG_36680 (gyrB)
03400 DNA repair and recombination proteins [BR:
ssy03400
]
SLG_36680 (gyrB)
Enzymes [BR:
ssy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SLG_36680 (gyrB)
DNA replication proteins [BR:
ssy03032
]
Prokaryotic type
DNA Topoisomerases
SLG_36680 (gyrB)
DNA repair and recombination proteins [BR:
ssy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SLG_36680 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
DUF2239
GH18_BT1044-like
Motif
Other DBs
NCBI-ProteinID:
BAK68343
NITE:
SLG_36680
UniProt:
G2IQG9
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Position
3949680..3952208
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AA seq
842 aa
AA seq
DB search
MTDQTSNPPKSNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEA
LAGHCDLVLIELNADGSVSVEDNGRGIPTDIHREEGISAAEVIMTQLHAGGKFENTSDDN
AYKVSGGLHGVGVSVVNALSEWLELTIWRDGKEHWMRFRHGDAEAPLIVRGDAPVVGGKA
KKGTRVTFMASTETFKNVTEYDFDKLEHRYRELAFLNSGVRILLRDKRHAEFKEHDLYYE
GGIAAFVKWLDRNKQSLMPEPIAISADRDGIGIDVSLEWNDSYYENVLCFTNNIPQRDGG
THLAAFRAALTRTLNSYGDKSGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDK
LVSSEVRQPLESLMADKMQEWLEENPGHAKSIIQKVVDAAAAREAAKRARELTRRKGVMD
IASLPGKLADCQERDPSKSELFLVEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARFD
RMLGSKEIGTLIQAMGTGIRDDFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQ
IIEAGHLYIAQPPLYKASRGRSEVYLKDEAALDQYLVDNGVDTMVLETSSGQRSGKDLRD
LIDHARRMRSLMRYVPRRYDSAIIEALALAGALAPSLGAEDRTGAITLAASWLDDADPEG
SWIGRLSAEGGYHLERLVRGVTDHHIIEAAFLTSAEARKLDTLAREQAALYATASRLLTA
RSAAQQTDAASEDEDGEAQPAVAAALTSGRGVLVTRPSELLDAVLASGRKGLSIQRYKGL
GEMNADQLWETTLDPNNRSMLRVEIEQADIADEIFTRLMGDVVEPRREFIQDNALNVANL
DV
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgacggaccagacgagcaatccccccaagagcaatgaatatggcgccgacagcatcaag
gtgctgaagggcctggatgccgtgcgcaagcggccgggcatgtatatcggcgacaccgat
gacgggtcgggcctgcaccacatggtgttcgaggtcagcgacaacgccatcgacgaagcg
ctggcggggcattgcgacctggtgctgatcgagctcaatgcggacggcagcgtgtccgtg
gaggacaatggccgcggcattcccaccgacatccatcgggaagagggaatttcggccgct
gaagtcatcatgacccagctccacgccggcggcaaattcgagaacacatccgacgacaat
gcctacaaggtctcgggcggtctccacggcgtgggcgtatcggtcgtgaatgccctttcg
gaatggctggaactgaccatctggcgcgacggcaaggaacactggatgcgctttcgccac
ggcgatgccgaggcgccattgatcgtgcgcggcgacgctccggtggtgggcggcaaggcc
aagaaaggcacgcgcgtcacattcatggcgtccacggagacattcaagaatgtcaccgaa
tatgatttcgacaagctggagcatcgctatcgcgagctcgctttcctgaattcgggcgtc
cgcatcctgctgcgcgacaagcgccacgccgagttcaaggagcatgatctctattatgaa
ggcggcatcgccgctttcgtgaaatggctggaccgcaacaagcagtcgctcatgcctgaa
ccgatcgccatttcagccgatcgcgacgggatcgggatcgacgtgtcgctggagtggaac
gacagctattacgagaacgtcctgtgcttcacgaacaacatcccccagcgtgacggcggc
acgcatctcgcggccttccgcgcggccctcacccgcacactcaacagctatggcgacaag
tccggcctgctcaagaaggagaaggtcagcctgacaggcgaggacatgcgcgaggggctg
acggccatcgtctcggtcaagctgcccgatcccaagttcagcagccagaccaaggacaag
ctggtctcgtccgaagtgcgccagccgctcgaaagcctgatggcggacaagatgcaggaa
tggctcgaggagaatccgggccacgccaagtcgatcatccagaaggtcgtcgatgccgca
gccgcgcgcgaagccgccaagcgcgcccgcgaactgacccgccgcaagggcgtaatggac
atcgcttccctgcccggcaagctggccgactgccaggagcgcgatccttccaagtccgaa
ctgttcctcgtcgagggtgactcggccggaggctccgccaagcagggacgcgatcgtcat
ttccaggcgatcctgccgttgcgcggcaagatcctgaacgtcgagcgcgcccgattcgac
cgcatgctgggatcgaaggaaatcggtaccctcatccaggcgatgggcaccggcatccgc
gacgacttcaatctcgaaaagctgcgctaccacaagatcgtcatcatgacggacgccgac
gtggacggcgcgcatatccgtacgctgctgctcacctttttctaccggcagatgccgcag
atcatcgaggcgggtcacctctacattgctcagccgccgctctacaaggcgtcgcgcgga
cggtccgaggtctacctcaaggacgaagctgcgctggaccagtatctcgtggacaatggc
gtggacacgatggtgctcgaaaccagctcggggcagcgctccggcaaggacctgcgcgat
ctcatcgatcatgcccggcgcatgcggtcgctgatgcgctatgtgccgcggcggtacgac
agtgcgatcatcgaagcgctggcgctcgccggcgccctcgcgccgtccctgggcgcggag
gaccgcaccggtgccatcacgctcgccgcttcctggctggatgacgcggatccggaaggc
agctggatcggccgcttgtccgcggaaggtggctatcatctcgaacggctggtgcggggc
gtcaccgatcatcacatcatcgaggccgcgttcctgacctcggcggaagcgcgcaagctc
gatacgctcgcgcgcgagcaggccgcgctctacgcaaccgccagccgactgctgacggcc
cgctcggccgcgcagcagaccgacgccgcaagcgaggacgaggatggcgaggcgcaaccc
gccgtcgcggcggccctcacgtccggacgtggcgtgctggtcacgcgtccgtccgaactg
ctcgatgccgtgctggcctcgggccgcaagggcctctcgatccagcgatacaagggtctt
ggtgaaatgaacgccgatcagttgtgggaaaccacgctggaccccaacaatcgctccatg
ctccgcgtcgagatcgaacaggcggacatcgccgacgagatcttcacgcgcctgatgggc
gatgtcgtggagccgcgccgcgaattcatccaggacaatgcactgaacgtcgccaatctc
gacgtttga
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