KEGG   Sphingomonas taxi: MC45_16320Help
Entry
MC45_16320        CDS       T03398                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
stax  Sphingomonas taxi
Pathway
stax03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:stax00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MC45_16320
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:stax03400]
    MC45_16320
Enzymes [BR:stax01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MC45_16320
DNA repair and recombination proteins [BR:stax03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MC45_16320
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AIT07675
UniProt: A0A097EJC6
LinkDB All DBs
Position
complement(3566217..3568682)
Genome map
AA seq 821 aa AA seqDB search
MPDPLERYNAKRDFAKTAEPAGTLEPGHGNGFMVQKHDATRLHWDFRLEVDGVLKSWAVT
RGPSLDPDEKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDRGTWAPVAGKSAKDID
KGHLHFTLDGERMKGEWLLIRLKPRAKEKRENWLLRKLDDAYAGGTDTLVEEALTSVDTG
RTMAEIAEGKPARKTAPAKAAKPAKAVKPAKRRAAKPQAMPAFREPQLCTLVDAVPAGAG
WLHEVKYDGYRALVAVAGGEAKVFTRSGLDWTDKFAAIAEAAAALPVDSALIDGEIVAFK
DGRPDFSTLKDAISAGGDMTLFAFDLLELDGEDLTALTTVERKDRLRAMLTDGPRLQFAE
HVLGSGEALFEAMCKEGLEGVVSKRADAPYAGKRNRTWLKAKCTRRQEFVIIGWTPSDKK
RGFKSLLLGLHEDGGFRYAGKVGTGFDQAMMDDLAERLAGLAVKTPPVDAESLKPFKAAL
RGARWVKPELVAEIAFAEVTPDKVLRHSSFLGLRGDKAAADVVAEVAEPAPAAPEVHIKV
SSRDRVIFPESDVTKGELADYYAHLSPIMLPWAGRRPVSLVRCPQGRAKQCFFQKHDAGS
FGDTVHHVDVKEKDGSVQPYLYVDDADGLVACVQMGTIEFHGWGSRIDDLEKPDRLVIDL
DPDEGLDFADTKRAAEHVSAQLAELGLVSFPLLSGGKGVHVVVPLTPQAAWPAVKDFADR
FARALAAAEPDRYVAVMTKAKRKGKIFIDYLRNQRGSTAIMPYSTRARAGAPVAAPVSWT
ELRDIDTAARWGVRDAEELLQRATSRALAGWGVAEQVLPDL
NT seq 2466 nt NT seq  +upstreamnt  +downstreamnt
gtgcctgatccgctcgaacgctataacgccaagcgcgacttcgcgaagactgccgagccg
gcggggacgctggaacccggccatggcaacggcttcatggtgcagaagcatgatgcgacg
cggctgcactgggacttccggcttgaggtggacggggtgctcaagagctgggcggtgacg
cgcgggccgagcctcgatcccgacgagaaacggctggcggtgcgcaccgaggaccatcct
ttgtcctatgcgacgttcgaggggacgatccccaaaggcgaatatggcggcggcacggtg
atgctgtgggatcgcggcacctgggcgccggtggcgggcaaatcggccaaggatatcgac
aaggggcatctccacttcacgctcgacggcgagcggatgaagggcgaatggctgctgatc
cggctgaagccgcgcgccaaggaaaagcgcgagaactggctgctgcgcaagctcgacgac
gcttatgccggcggcaccgacacgctggtcgaggaggcgctgaccagcgtcgatacgggc
cggacgatggcggagatcgccgagggcaagccggcgcgcaagaccgcgcccgccaaggcg
gcgaaacccgcgaaagccgtcaaacctgcgaagcgccgcgccgccaagccgcaggcgatg
cccgcctttcgcgaaccgcagctttgcaccctggtcgacgccgtccccgcgggcgccggc
tggctgcacgaggtgaaatatgacggctatcgcgcgctggtcgcggtcgccgggggcgag
gcaaaggtcttcacgcgcagcggactcgactggaccgacaaattcgccgcgatcgccgag
gcggccgctgcgctgcccgtcgacagcgcgctgatcgatggcgagatcgtcgcgttcaag
gacgggcggcccgatttctcgacgctcaaggacgccatttcggccggcggcgacatgacg
ctgttcgccttcgacctgctcgaactggacggcgaggacctgacggcgctgaccaccgtc
gagcgcaaggaccggctgcgtgcgatgctgaccgacgggccgcgcctccagttcgccgag
cacgtgctcggctcgggcgaggcgctgttcgaggcgatgtgcaaggaggggctggagggc
gtcgtctcgaaacgcgccgacgcgccttatgccggcaagcgcaaccggacgtggctcaag
gcgaaatgcacgcggcggcaggagttcgtcatcatcggctggacgccgtcggacaagaag
cgcggcttcaagtcgctgctgctcggcctgcacgaggatggcggctttcgctatgccggc
aaggtcggcaccggcttcgatcaggcgatgatggatgacctcgcggagcggctggcgggg
cttgcggtcaagacgccgccggtcgatgcggagagcctcaagccgttcaaggcggcgctg
cgcggcgccagatgggtgaagcccgaactcgtcgccgaaatcgctttcgccgaggtgacg
cccgacaaggtgctccgtcattcgagcttcctcggcctgcgcggcgacaaggcggcggcg
gacgtggtggcggaggtcgccgaacccgcacctgcggcgcccgaggtgcatatcaaggtc
agcagccgcgaccgcgtgatctttccggagagcgacgtcaccaagggcgagctcgccgat
tattatgcgcacctctcgccgatcatgctgccctgggcggggcggcggccggtcagtctg
gtgcgctgtccgcaggggcgggccaagcaatgcttcttccagaagcatgacgcgggcagc
ttcggcgacacggtgcatcatgtcgacgtcaaggagaaggacggctcggtgcagccctat
ctctatgtcgacgatgccgacgggctggtcgcctgcgtgcagatggggacgatcgaattc
cacggctggggatcgcggatcgacgatctggagaagcccgaccggctggtgatcgacctc
gaccccgacgaggggctcgacttcgccgacaccaagcgcgcggcggagcatgtcagcgcg
cagctcgccgaactggggctggtcagctttccgttattgtcgggcggcaagggtgtgcac
gtcgtcgtgccgctgacgccgcaggcggcatggccggcggtgaaggactttgcggatcgc
ttcgcgcgggcgttggcggcggccgagcccgaccgctacgtcgcggtgatgaccaaggcg
aagcgcaaggggaagatcttcatcgactacctgcgcaaccagcgcggcagcaccgcgatc
atgccctattcgacgcgtgcgcgggccggcgcgccggtcgcggcgccggtgtcgtggacc
gagctgcgcgatatcgacaccgcggcgcgctggggcgtgcgcgatgccgaggaactgttg
cagcgcgcgacgtcgcgggcgctggcgggctggggcgtggcggagcaggtgttgccggat
ttgtga

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