Peterkaempfera bronchialis: C7M71_003405
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Entry
C7M71_003405 CDS
T05561
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
stri
Peterkaempfera bronchialis
Pathway
stri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
stri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C7M71_003405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
stri03400
]
C7M71_003405
Enzymes [BR:
stri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C7M71_003405
DNA repair and recombination proteins [BR:
stri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C7M71_003405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AXI81127
UniProt:
A0A345T572
LinkDB
All DBs
Position
complement(760799..761740)
Genome browser
AA seq
313 aa
AA seq
DB search
MLATAGRLPAVQADWAYEVKWDGMRVLAYLPGDGTVRLESRQGRDVTAQYPELAALPEAL
PPGTDAVLDAEIVALGLDGRPSFRRLQDRMSLYRPEAVRASAAAAPVTAMVFDVLWLRGG
PTTARPYTARRDLLTGLGIDHPRAVVPANWVGTGTLAFEWTRSAGLEGVVAKRLESPYRP
GTRSREWIKIKHLRTADVAIGGWVADGPRASACQALLIGTADPTGLRYAGRVGTGFTQRD
RQALAGLLLPLEREAPPFTANLEALREESGREVRWVAPVLQGEVEYLEQTSGGRLRQPVW
RGLRGPAADVPPY
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgctggccacggcgggtcggctgccggccgtgcaggccgactgggcgtacgaggtgaag
tgggacggcatgcgggtcctcgcctatctgcccggcgacggcaccgtacggctggagtcc
cgccaggggcgcgacgtcaccgcgcagtacccggagctggccgcgctgcccgaggcgctg
ccgcccggcaccgacgccgtcctggacgcggagatcgtggcgctgggcctcgatggaagg
ccctccttccgacggctccaggaccggatgagcctctaccggccggaggcggtgcgcgcc
tcggccgccgccgcgccggtgacggcgatggtcttcgatgtgctctggctgcgcggcggg
ccgaccaccgcacggccctacacggcccgccgggacctgctgaccggcctcggcatcgac
cacccccgggcggtggtcccggccaactgggtgggcaccggcaccctggccttcgagtgg
acccggtcggccggactggagggggtggtcgccaagcggctggagtccccgtaccggccc
ggcaccagatcccgggagtggatcaagatcaagcacctgaggaccgccgacgtcgccatc
ggcggctgggtcgccgacggcccccgcgccagcgcctgccaggcgctgctcatcggcacc
gccgaccccaccgggctgcgctacgcgggccgggtcggcaccggcttcacccagcgcgac
cggcaggccctcgcgggcctgctgctcccgctggagcgggaggcgccgcccttcaccgcc
aatctggaggccctgcgcgaggagtccggccgggaggtgcgctgggtcgccccggtgctc
cagggcgaggtggagtacctggagcagacctccggcggccgactgcgccagccggtctgg
cgcggactgcgcggccctgccgccgacgttcccccgtactga
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