Sulfitobacter alexandrii: BOO69_18745
Help
Entry
BOO69_18745 CDS
T04555
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
suam
Sulfitobacter alexandrii
Pathway
suam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
suam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BOO69_18745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suam03400
]
BOO69_18745
Enzymes [BR:
suam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BOO69_18745
DNA repair and recombination proteins [BR:
suam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BOO69_18745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APE45609
UniProt:
A0A1J0WMK0
LinkDB
All DBs
Position
unnamed1:27840..30260
Genome browser
AA seq
806 aa
AA seq
DB search
MGRLDRYIEKRDFDRTPEPRDGAAGDALALRYSMQKHDATRTHFDLRLEWDGALLSWAVT
RGPSLHPSDKRLSVRTEDHPLSYLGFEGTIPEGNYGAGTVMLFDIGHWQPVEPVEKGLKK
GHLHFRLHGQRLTGGWHLVRMKGRKSGDKGRENWLLIKEEDEASGRRDPVDRYRRSTSTN
RTLREIAAEKPVVPGGHAGKRPKFRKIQLASLVDEAPSGKDWWHEVKLDGYRALVALGKG
GPRIFTRNGHDWTDRFESLLPAFDAMDCDSALIDGEIVAGAGLQGFSSLQKAIKAGGPFR
FYGFDLLEADGRKWIDQPLADRRERLEKIFHDAPPLGLAQLSPIIDGAPDDALAKICKAG
GEGIISKRTDQPYRGTRTSNWRKVKCERRDEFVILGWQESEKRGRPFASLALGAYEGGGL
TYVGKVGTGFDADTMEDLQSAMSGMERKTAPADIPKDESRGVTWITPKLVAEIKYAEKTD
DGRLRHAVFIALREDKPARTVKVEEDRMDNDRVEIAGIGVSHPNRKVYPAAGITKRQVAE
YYEAMADRILEDAADRPLSLVRLPEGIEGERFFQKHAGKGFPDEIRTVQIEESDGDTADY
MYVSTAAGLVGAAQMGAMEFHVWGSRRDDLDRPDRMVFDLDPDESLGFSDVTAAALDLRD
ILSDLDLPCWPLVTGGKGVHVVVPLRRIANWDTVKLYSKVLAKHLADTQPDRFTASMSKS
RRSGRIFIDWLRNERGSTAIAPFSLRARPGAPVATPVGWDELSAVTSADAFPMAKALERN
WSDASVPKPAGLSNGRIDLLDKLVGQ
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgggacggctggaccgttatatcgagaaacgggacttcgaccggacgcccgaaccccgc
gatggcgctgcgggcgatgcgctcgcgctccgctattccatgcagaaacacgatgcgacc
agaacccatttcgatctgcggcttgaatgggacggcgcattgttgagctgggcggtcaca
cgcgggccctcgctgcatccgtcggataagcggctgtcggtccggacggaggaccacccg
ctgtcctacctgggcttcgaagggacgattcccgaaggcaattacggtgccggtacggtc
atgctgttcgacatcgggcactggcaaccggtggagcctgtcgagaagggtctgaagaag
gggcatctgcatttccggctgcacggccagcggctgaccggcggttggcatcttgtccga
atgaagggccgcaaatccggcgacaagggccgggagaactggctgctcattaaggaggag
gacgaggcgtcagggcgtcgtgaccccgtagaccgctaccgccgcagcacttcgacgaac
cggaccctgcgcgagatcgcggcggagaaacccgtcgtgccgggcggccatgcgggaaag
cgccccaagttccgcaagatacagctagcctcgctggtggatgaagccccctcggggaag
gactggtggcatgaagtcaagcttgacggctaccgcgcgctggtcgccctcggcaagggc
gggccgcggatctttacccgcaatgggcacgactggaccgacaggttcgaaagcctgctg
cccgcattcgatgcgatggactgcgactccgcgctgatcgacggcgagatcgtcgcgggc
gcggggcttcagggtttttccagcctccagaaggcgatcaaggcaggtggcccgttcagg
ttctacggcttcgacctgctcgaagcggacgggcgcaaatggatcgaccagccgctcgcc
gaccggcgcgagaggctggaaaagatctttcacgacgcaccgcccctcgggctggcacaa
ttgtcgccgatcatcgacggcgcgccggacgatgcgcttgccaaaatctgcaaggcaggc
ggcgagggcattatttccaagcggaccgaccagccctaccgcggcacgcggaccagcaac
tggcgcaaggtcaaatgcgaacggagagacgaattcgtcatcctgggctggcaggaaagc
gaaaagcggggccggcccttcgcctctctcgcgctcggcgcctacgagggcggcggcctg
acctacgtgggcaaggtcggcaccgggttcgatgccgacaccatggaagatttgcaatcc
gccatgtcgggaatggaacgcaagaccgctccggcggacatccccaaggatgaaagccgg
ggggtgacctggatcacgccgaaactggtcgccgagatcaagtacgccgagaagacggac
gacggacggcttcggcatgccgtgttcatcgcattgcgcgaggacaagcccgcccgcacc
gtcaaggtggaggaggaccgcatggacaacgatcgcgtcgaaattgccggaatcggcgtc
agccacccgaaccggaaagtctaccccgcagcgggcatcaccaagcgccaggttgcagaa
tactacgaggcgatggccgaccgtattctggaggacgcggccgaccggcctctctcgctg
gtgcggctgcctgaagggatcgaaggggaacggttctttcagaaacacgcgggaaagggc
tttcccgacgagatacgcacggtgcagatcgaggaaagcgacggcgacacggcggactac
atgtacgtgtcgaccgccgcggggctggtcggcgcggcgcagatgggagcgatggaattt
cacgtctgggggtcaaggcgggatgacctcgaccgtcccgacaggatggtattcgacctc
gatccggatgaaagcctcggattttcggatgtgacggctgccgctctggacctccgggac
atcttgtcggatctcgacctgccctgctggcccctcgtcaccggtggcaagggggtgcac
gtggtggtcccgctgcgccggattgccaactgggatacggtgaagctttattccaaggtc
ctggcaaaacacctcgccgacacccagccggaccggttcaccgcctcgatgtcgaaatca
cgccgctccgggcggatcttcatcgactggctgcgcaacgaacgggggtcgaccgcgatc
gcgccgttctcattgcgggcgcggcccggtgcgccggtcgcgacgccggtcggctgggac
gaactgtcagccgtgacgtcggccgatgccttcccgatggcgaaggcccttgaacggaac
tggtcggatgcgagcgtgccgaagccggcgggtctctcgaatggccggatagacctgctg
gacaagcttgtcggccagtga
DBGET
integrated database retrieval system
