Sulfurihydrogenibium sp. YO3AOP1: SYO3AOP1_0981
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Entry
SYO3AOP1_0981 CDS
T00715
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sul
Sulfurihydrogenibium sp. YO3AOP1
Pathway
sul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYO3AOP1_0981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sul03019
]
SYO3AOP1_0981
03009 Ribosome biogenesis [BR:
sul03009
]
SYO3AOP1_0981
Enzymes [BR:
sul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYO3AOP1_0981
Messenger RNA biogenesis [BR:
sul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYO3AOP1_0981
Ribosome biogenesis [BR:
sul03009
]
Prokaryotic type
rRNA helicases
SYO3AOP1_0981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UTP25
ERCC3_RAD25_C
AAA_19
DUF6036
P-loop_SecA
Flavi_DEAD
ADH_zinc_N
Peripla_BP_4
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACD66602
LinkDB
All DBs
Position
1014499..1015716
Genome browser
AA seq
405 aa
AA seq
DB search
MSNQGKTFKDLNLSKETLKSLDELGYSKPTEIQEKAIPAVMTGKDLVAQAQTGTGKTAAF
GVPIVEKVNPKQKKVQALILVPTRELAIQVAKEIKELGKNKKVYTLAVYGGKSISHQINF
LKKGSDVVVVGTPGRVRDLLERGVLNLDNVKMFVLDEADRMLEMGFIDDIEEIMSYLPED
RQNLLFSATMPKEILDLAEEFLNENYETIRVKPDEVTVEKIKQIIYRVNPRDKFKKLTEV
LSQNEAEKVIIFTQTKIEADELAERLNEEGFNASAIHGDFSQKKRETVLHNFRTGKLKIL
VATDVAARGLDIKGVDLVINYGLPRDAESYIHRIGRTGRAGREGTAISIMTPSEDKQLQN
IQKKTKANIEVINEAQEKKLSSAQKDKSSQKERSSRNQTRRRQRS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcaaggtaaaacattcaaggatttaaatctatcaaaggagactttaaaatcc
ttagacgaattaggttattctaaacctacagaaattcaagaaaaagcaattccggcagtt
atgaccggaaaggatttggtagcacaagcacaaacaggtacaggaaaaactgcagctttt
ggagtaccgattgttgaaaaagtaaatccaaaacaaaagaaagttcaagcattaatcttg
gttcctacaagagagttagcaattcaagtagctaaggaaattaaagaacttggaaaaaac
aaaaaagtttataccttagcagtttacggcggtaaatctattagccatcaaataaacttt
ttaaagaaaggttcggatgtggtagtagttggtacaccaggaagagttagagatttatta
gaaagaggcgttttaaatcttgataatgtaaaaatgtttgttttagacgaagcagataga
atgcttgaaatgggatttatagacgatattgaagagattatgtcttaccttccagaagat
agacaaaatttattattctcagcaactatgccaaaagagattttagatttagctgaagag
tttttaaatgagaattatgaaacaataagagttaagccagatgaagtgactgttgaaaag
ataaaacaaatcatttacagagtaaatccaagagataagtttaagaaattaacagaagtt
ttatctcaaaatgaggcagaaaaagtaattatttttacacaaactaaaatcgaagctgac
gagcttgcagaaagattgaatgaagaaggctttaatgcaagtgctattcatggtgatttt
tctcaaaagaaaagagaaactgttttacataattttagaacaggcaaattaaaaattctt
gtagctacggatgttgcagcaagaggacttgatataaaaggtgttgaccttgttataaat
tatggtttaccaagagatgcagaaagttatatccatagaataggcagaaccggaagagca
ggaagagaagggacagctatttctataatgactccttctgaagacaaacaacttcaaaat
attcaaaagaaaacaaaagcgaatatagaagtcataaatgaagcacaagaaaagaaactt
tcttcagcacaaaaagataaatcttctcaaaaagaaaggtcttcaagaaatcaaacaaga
agaagacagagaagttaa
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