KEGG   Sulfitobacter sp. D7: B5M07_07060Help
Entry
B5M07_07060       CDS       T05714                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
suld  Sulfitobacter sp. D7
Pathway
suld03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:suld00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    B5M07_07060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:suld03400]
    B5M07_07060
Enzymes [BR:suld01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B5M07_07060
DNA repair and recombination proteins [BR:suld03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     B5M07_07060
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AYE85889
UniProt: A0A386TDN1
LinkDB All DBs
Position
complement(1456228..1458687)
Genome map
AA seq 819 aa AA seqDB search
MAKSPDRLANYNAKRDFETTAEPRGQIGSGAGQSFVVQKHDATRLHYDFRLEWEGVLLSW
AVTKGPSPDPSEKRLAVRTEDHPLDYGGFEGTIPKGQYGGGTVMLWDRGTWMPQGDVAKG
LKDGKLKFTLQGQQMQGGWTLVRMRGQEKRENWLLIKERDDYARDVPDGLTKGTARSITT
GRTMAEIAKDAPAGDVADPEPKRKGKNPSFVKPQLATLVSDAPEGEDWMHETKFDGYRCL
VSLGKGGARLYTRSGKDWTDKFNGLGHAFDPLPCDRALLDGEVMAAKINGSAFSSLQKAL
KEGHPLVFYAFDLLSLDGDDFRSDAQKDRRARLAKLLSGVPAGGPLRLSEHVVGHGPEVF
DRACKAGAEGIISKRIDAPYSGRRSKNWLKVKCTRRQEFVIIGYSPSDKKGRAFASLLLG
SHEGGELRYKGRVGTGFSEAVMADLARAMTARKTPPASDVPAEVARDAKWVRADLVAEVD
FTEFTADGVIRHGSFLGLRQDKDAGQVTLEEPQEEPKMGDDSKIGGVQISNADRKVFPDA
GCTKGDVARHYARVGPRMIELMGHRPLSLFRCPSGIDGQCFFQKHDSGGMPDALSRVSIE
ESDGDAADYLYATRPESLIAAAQMGSLEYHIWGARVDRLDRPDRLVFDLDPDEGLDWPDV
RAAAFELRDALAALGLQSGAIVTGGKGVHVWLALRRTRGWETVKLFSKTFAHVMAAQNPD
RYVATMSKAKRKGRIFIDWLRNERGSTAIAPYSLRARPGAPVAVPVTWEELGNLDSANGF
RMGDIAARLDRPCPALAVQDDLQSLTDGVIKKLQAWSES
NT seq 2460 nt NT seq  +upstreamnt  +downstreamnt
atggccaaatcccccgacaggcttgccaattataacgccaagcgtgatttcgagacgaca
gccgaaccccgtggccagatcggcagcggcgcgggccaaagcttcgttgtccaaaaacat
gacgccacccgcctgcactatgactttcgtcttgaatgggaaggggtgctgctgagctgg
gccgtcaccaaaggcccctctcccgacccatccgaaaagcgtcttgccgtgcggacagag
gatcacccgctcgactacggcgggttcgaagggacgatcccaaaggggcaatatggcggc
ggcacggtgatgctctgggaccggggcacttggatgccgcagggcgatgtcgccaaggga
ttgaaggacggcaagctcaaattcacgctgcaaggccagcagatgcagggcggttggaca
ctggtgcggatgcggggtcaggaaaagcgtgagaactggctgctgatcaaggaacgagac
gactatgcccgcgatgtaccggatgggctgaccaagggcaccgcccggtcgatcaccaca
ggccgcaccatggcggaaatcgccaaggatgcccccgcgggagatgtcgcggacccagag
cccaagcgcaaaggcaagaaccccagcttcgtcaaaccacagcttgccacgctcgtttcc
gacgcgcccgagggcgaggattggatgcatgagacgaaatttgacggctaccgctgtctg
gtttctctcggcaagggcggtgcgcggctctatacccgctcgggcaaggattggaccgac
aaattcaacggacttggtcatgcttttgatccgctgccctgcgaccgcgccctgctggac
ggagaggtcatggcggccaagatcaatggctctgcgttttcatcgctacaaaaggcgctg
aaagaggggcatccgctggttttttacgctttcgatttgctgtcacttgatggcgatgac
tttcggagcgatgcacaaaaagaccgccgcgcgcgtctggcaaagctgctttccggcgtg
ccagcgggcgggccgttacggctgagcgaacatgttgtcggtcatggccccgaagtcttt
gaccgcgcgtgcaaagccggggccgaggggatcatcagcaaacgtatcgacgcgccctac
tccggcagacgcagcaagaattggctcaaggtcaaatgcacccggcggcaggaattcgtc
atcatcggctattccccctctgacaaaaagggccgcgcctttgcctcgctcctgttgggc
agtcatgaggggggtgaattacgctataaaggccgtgtcggcacggggttttccgaagcg
gtgatggccgatcttgcccgtgccatgaccgcccgcaaaaccccgcccgccagcgacgtg
ccagccgaggttgcgcgggatgccaaatgggtccgcgccgatctggtggccgaggtcgac
tttaccgaattcaccgccgatggcgtgatccgccacggcagttttctgggcctgcgtcag
gacaaggacgccggccaagtgacattggaggaaccgcaggaggagccgaagatgggcgat
gacagcaagatcggcggcgtgcagatcagcaacgccgaccgcaaggttttccccgatgca
ggctgcaccaagggtgacgtggcgcggcattacgcgcgtgtcggcccgcgcatgattgaa
ctcatgggccatcgccccctgtcgctgttccgctgcccctcggggatcgacgggcaatgt
ttctttcaaaaacacgacagtggcgggatgcctgatgcactgtcgcgggtatcgattgag
gaaagcgatggcgacgcggcggattacctctatgccacgcggcccgaaagcctgatcgcg
gcggcgcagatgggcagtctggaatatcatatctggggcgcgcgggttgaccggttggac
cgccccgaccggctggtctttgaccttgaccccgatgaggggctggactggcccgatgtc
cgcgcggcagcctttgagctgcgcgacgcgctggcggctctgggcctgcagtcgggtgcc
atcgtcaccggcggcaagggcgtgcacgtctggctggccttacgccggacacgcggctgg
gagacggtcaagctgttctccaagacctttgcccatgtcatggcggcgcagaaccctgat
cgctatgtcgcgaccatgtccaaggccaagcgcaagggccgcattttcatcgattggctg
cgcaatgaacgcgggtctacggccatcgcgccctattccctgcgcgcgcgccccggtgcg
ccggtcgccgtgccggtaacgtgggaagagttgggaaacctcgacagcgccaacgggttc
cgcatgggcgatatcgccgcgcggctggatcggccctgccccgcgctggcggtgcaagac
gatttgcaatcgctgaccgatggggtgatcaagaagctgcaggcttggtctgaaagctag

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