Sulfurimonas xiamenensis: FJR47_05175
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Entry
FJR47_05175 CDS
T06240
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
suln
Sulfurimonas xiamenensis
Pathway
suln02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
suln00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FJR47_05175 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
suln03021
]
FJR47_05175 (rpoD)
Transcription machinery [BR:
suln03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FJR47_05175 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
CRISPR_Cas9_WED
MCR_beta_N
Sigma70_r4_2
Vpu
Motif
Other DBs
NCBI-ProteinID:
QFR43324
UniProt:
A0A5P8NMW0
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All DBs
Position
1014426..1016282
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AA seq
618 aa
AA seq
DB search
MTAKELNKAIETFFTNQKPKECLTYESLIDLFDKQPTTAQANNIYKLIQKYKACIYTSSE
HAKLLNDKEAEARRSAQRKMIENNETDNFDILKEHELLEWSRSDSPVRMYLREMGQIPLL
TKEEEIEISKKIEAGESIIIDAICSVPYLIDFILDYKEPLINRERRVKELFKSFEDDNDD
SDNDDDNDDNEESENEKTLTVKDKTRVEKVTISFKALEKAKKEWIKTAEKAPENLDGELT
PEIIYYYLAITYKKAILKETLLDLGPTSKLINELVKAMETALKSDEGYDKELKRLEYKLP
LFNATLKANHKILLEKICDLNKEDIATMVPEATMVSTYMEIKKLVQTKEASKNSFDMEPE
KLADILEQIKRGKNISEISKTKMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAV
DKFEYQKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKHLQEHGK
EPDVEIIAQEVGLSVEKVKNVIKITKEPISLEAPIGSEDDGRFGDFIEDKTSLSPSDSIL
KDDLRVQIESVLEQLNEREKAVIKLRFGIMDDESDRTLEEIGKELSVTRERVRQIESSAI
KKLKHPKVGRKLKNYMEE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaaagaactcaataaagctattgaaacattttttacaaatcaaaaaccaaaa
gagtgtttaacttatgaatcacttatagacctttttgataagcagccaaccaccgcacaa
gcaaataatatctataaacttatacaaaaatataaagcttgtatatacacatcatccgaa
catgcaaaacttcttaacgacaaagaggcagaagcaagaagaagcgctcaaagaaagatg
attgaaaacaatgaaactgacaattttgatatattaaaagagcatgagcttttagaatgg
tctcgttcagattctcctgttcgtatgtatcttcgagaaatgggacaaattccgctttta
acaaaagaagaagagatagaaatctcaaaaaaaatagaagccggagagagcataattatc
gatgctatatgctctgttccatacctgatagattttatcctggattacaaagaaccactg
attaatcgtgaaagaagagtaaaagagttatttaaaagttttgaagatgacaacgatgat
tcggataatgatgatgacaatgatgataatgaagagagtgagaatgaaaaaacattaaca
gtaaaagacaaaaccagagttgaaaaagttactataagtttcaaagcactagaaaaagct
aaaaaagagtggataaaaacagcagagaaagcacctgaaaatttagacggagaacttacg
cctgaaattatctactattatctggctattacatacaaaaaagctattttaaaagaaaca
ctattagacttaggtcctacttctaaacttataaacgaacttgtaaaagctatggaaact
gcacttaaaagtgatgaagggtatgataaagagttaaaaagattagagtataaacttcca
ctattcaatgctacgctcaaagcaaatcataaaattttacttgaaaaaatttgtgattta
aataaagaggacattgctacaatggttcctgaagctactatggtcagtacatatatggag
attaaaaagcttgtacaaaccaaagaggcttcaaaaaacagctttgacatggaacctgaa
aagctagcagatattttagagcagatcaaacgcggtaaaaatatctctgaaatctcaaaa
actaagatggcaaaatcaaacctaagacttgtagtatccattgcaaaaagatatacaaac
cgcggtcttccatttcttgatctaattcaagagggaaatattggtcttatgaaagcagtt
gataaatttgaatatcaaaaaggttataaattttcaacatatgcaacatggtggatccgt
caagcaatttcgcgtgctatagctgatcaagcaagaactattcgtatcccgatacatatg
atagagacaatcaaccgtatcaataaaattatgcgtaaacaccttcaagaacatggaaaa
gagcctgatgttgaaataatcgcacaagaagtcggactttctgttgaaaaagttaaaaat
gtaattaagattacaaaagagccgataagtcttgaagcgcctataggcagtgaagatgat
gggcgttttggtgactttattgaagataaaacatcattgtcaccatctgattcaattctt
aaagatgatttaagagtccagatagagagtgttttagaacaattaaatgaaagagaaaaa
gctgttattaaacttcgttttggaattatggatgatgagtctgacagaacacttgaagag
ataggaaaagagctaagtgtaacgcgtgaaagagtccgccaaatcgaatcaagcgcaatt
aaaaaactaaaacatcctaaagtaggaagaaaacttaaaaactatatggaagagtaa
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