Candidatus Sulfuricurvum sp. RIFRC-1: B649_04885
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Entry
B649_04885 CDS
T02537
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sulr
Candidatus Sulfuricurvum sp. RIFRC-1
Pathway
sulr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sulr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B649_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sulr03019
]
B649_04885
03400 DNA repair and recombination proteins [BR:
sulr03400
]
B649_04885
Enzymes [BR:
sulr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B649_04885
Messenger RNA biogenesis [BR:
sulr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B649_04885
DNA repair and recombination proteins [BR:
sulr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B649_04885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
GAD
Motif
Other DBs
NCBI-ProteinID:
AFV97291
UniProt:
K7SLM3
LinkDB
All DBs
Position
complement(957665..959473)
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AA seq
602 aa
AA seq
DB search
MSESLTDKYKVLKHTFGFSSFREMQEDAVDAILSRRDLAMLLPTGGGKSLCYQLPTLLMD
GITIVVSPLIALMHDQVIALKELGIEAEMISSSQSPQEQQEAFSKAKNGVLKLLYIAPER
LANVSFLSWLETLDINFFVIDEAHCISEWGHEFRDDYRRLGELRSAFPHTPIAAFTATAT
PKVREDILSQLGLNDPLILRAPVLRKNIKITVRERDGGWRNELMNILKEHEGESGIVYAF
SRKETEELAEFLSKKGIKCLAYHAGMSGSIRHDTHTSFLNDETQIIVATVAFGMGIDKGD
IRFVIHTSLPKTIENYYQEIGRAGRDGIDSEAILFYSGTDFYNKKRLIDEGSDPQYREMI
LSKLRASMDYATAEECRHRLIASYFSDTIAPCGDKCDNCVGSDIQKQEITTPAQKFLSCL
YKTGERFGATYISEVLCGEEKEKILSNSHQNLSVFGIGKELSKTTWSTISKRLIELGAIE
PDEYKALKITPIGADILRGKTAVHIRSDRLSTKKVTVKTKHSDLNTPKYFENFKALRAAI
AKEHRIPAYIVFGDKTLYSLAEQLPSTKEEMLGISGIGEVKFERYGEAFLNLSHELREKE
RD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgaatccttaaccgacaaatacaaagttctcaaacacacctttggtttctccagt
tttagagagatgcaagaagatgcggtagacgcgattctgagccgtcgtgatttggcaatg
ttactccctaccggagggggaaaatcgctctgctatcagcttccaacacttctgatggat
gggatcacgattgtcgtctctcccctcatcgccctcatgcatgatcaggtgattgccctc
aaagagctcgggatcgaagcggagatgatctcctcatcgcaatcgccgcaagaacaacaa
gaggcattttccaaggctaaaaacggcgttttaaaactcctctacatcgcccccgaaaga
ctggcaaacgtctcctttctctcatggctcgaaacgctcgatatcaactttttcgtcatc
gacgaagcccactgtatcagtgagtgggggcatgagtttcgtgatgattaccgacggctg
ggtgagttgcgctccgcttttcctcatacccctatcgccgccttcaccgctaccgccaca
ccaaaagtacgggaagacatcctctcgcaactggggctcaacgatccgctgatcctccgc
gccccggtactgcgtaaaaacatcaagatcactgttcgagaacgtgatggcggatggcgc
aatgagctgatgaatattttaaaagagcacgaaggggagagtggaattgtctatgctttc
tcccgtaaagagaccgaagagctcgccgaatttctctccaaaaaagggatcaaatgttta
gcctatcatgcggggatgagcggctccatacgtcacgatacccatacatcgtttctaaac
gacgaaacgcagatcattgtcgccaccgtcgcattcgggatgggaatcgataaaggagat
attcgcttcgtcatccacacctcacttcctaaaaccatcgaaaactactatcaggagatc
ggacgtgccggacgggatggaatcgactccgaagcgatactcttttattcgggaactgat
ttttacaacaaaaaacggcttatcgatgaggggagtgacccccaatatcgcgagatgatc
cttagcaagctccgcgcatcgatggattacgcaactgccgaggagtgccgccatcgtcta
atagcctcctatttcagcgatacaatcgccccttgcggtgacaaatgcgacaactgtgtg
ggcagtgatatccaaaagcaagaaataaccacccccgcccaaaagttcctctcctgtctc
tataaaacgggtgagcgattcggagccacctatatctcggaagttctctgtggagaggaa
aaagagaaaatcctctccaattctcatcaaaatttgagcgttttcgggatcggaaaagag
ctatctaaaaccacatggagcaccatctccaaaagactcatcgaactcggtgctatagag
cccgatgagtacaaagcactaaaaatcaccccaatcggagccgacatattgagaggaaaa
acggctgttcatatccgatcagatcgtctatcgaccaaaaaagtaaccgttaaaaccaaa
cactccgatctcaacaccccaaaatacttcgaaaacttcaaagccctccgtgccgccatc
gccaaagagcaccgcatccctgcctacatcgtcttcggagataaaaccctctactccctt
gccgaacaactccctagcaccaaagaggagatgttgggtatcagcggtatcggagaggta
aaattcgaacgatacggagaagcatttttgaacctctcgcatgagttgagggaaaaagag
agggattga
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