Sceloporus undulatus (fence lizard): 121925662
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Entry
121925662 CDS
T07740
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sund
Sceloporus undulatus (fence lizard)
Brite
KEGG Orthology (KO) [BR:
sund00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sund00536
]
121925662 (COL13A1)
Glycosaminoglycan binding proteins [BR:
sund00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121925662 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121925662
NCBI-ProteinID:
XP_042314017
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Position
3:169945171..170157009
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AA seq
747 aa
AA seq
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MVVVVEEKGWKEAAPDALESGCLTSHPRTGDGGRCCKGPLLLGSGLPGVSFLSLVLSLLL
YFRTSDLQSRVSHLEADRATPLPACLSTDQMETAILGRVDQLLAERLKFTLSRHREARDI
HPRCNCPAGPPGPTGRPGLPGDKGTMGIRGLPGLKGQPGEKGAPGEAGMSIIGPRGPPGQ
PGTRGFPGFPGPIGLDGKPGQLGQKGEMGPAGPKGQPGSPGQKGEKGQCGDYPHRLLPLL
NSVRLAPPPVIKRRTFQGEQGQAGIQGPPGPPGPPGTPGQPGPVGPAGKAGEPGKPGRDG
KGLPGPPGPKGEPGVQGYHGRKGEAGEAGEAGLPGPPGLPGPTGPKGEKGERNMKGEPGI
PGAKGEKGKPGDPGPPGIIGQKGEKGDSGNALGGGKGEPGPPGLPGPPGPKGEPGIPGEQ
GPFGPRGPKGEPGKNEMVDYNGNINEALQEIRTLALMGPPGLPGVAGPPGPPGQKGEVGL
PGPPGHDGEKGPRGKPGEMGPPGPKGPPGKDGPPGMKGEIGSMGTTGAKGEKGETGQAGS
PGLDGLTGEKGDRGMPGPPGLPGPIGLPGFTGEKGEPGERGDTGDTVTGPPGPQGPPGTP
GVQGLPGPKGEAGVDGMKGEKGALGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPA
GPKGERGNKGDPGTAGPIGPAGLPGLPGSPGEKGNRGERGKKGSRGPKGDKGDQGAPGLD
APCPLGEDGLPIQGCWNKGQTPWLIAK
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggtggtggtggtggaggagaaaggctggaaagaggctgctcctgatgccttggagagt
ggctgcctgacatcccatcccagaacaggcgatgggggaagatgctgtaaaggacctctg
ctgctgggctctgggctgcctggagtctctttcctttctctggtgctgagcctcctgctc
tacttcaggacatcagacctgcagtccagggtttcccatttggaggcagacagagccact
ccgctccctgcctgcctctccacagaccaaatggagacagctattttgggaagagttgac
caactgctcgctgagagattaaagttcaccttgtcaagacatcgggaagctagagatatc
cacccacgatgcaactgcccagcaggccctcctggtcctacaggaagacctgggcttccg
ggagacaaaggcaccatggggatccgtggactaccgggactaaaggggcaacctggagag
aagggagcccctggagaagctggcatgtccatcattggtccccgtggtcctccaggacag
cctggaacaagaggttttcctgggtttccgggcccaattggtttagatggcaaaccaggg
caacttggacagaaaggggagatgggcccagctggtcccaaaggtcagccaggaagccct
ggacaaaaaggagaaaagggtcagtgtggagattatccacacaggctgttgcctcttctc
aattcagtgcggctggctccacccccagtcataaagagacgcaccttccagggtgaacaa
ggacaggcaggaatccaagggcctccgggaccacctggaccaccaggaaccccaggacaa
cctggcccagttggcccagcagggaaagcaggagagccagggaagccaggcagagatgga
aagggcttgccaggacctcctggaccaaagggagaacctggagtgcagggataccatgga
agaaagggtgaggctggtgaggcgggtgaggctggcttaccaggaccccctggccttcct
ggtcctactggccccaagggtgaaaagggagaacgtaacatgaagggtgaacccggaatt
ccaggagcaaagggtgagaagggaaaacctggtgatccaggccctcctggaatcatagga
caaaagggagaaaagggagattctggcaatgcacttggaggaggtaaaggggaacctgga
ccaccaggattgcctgggcctcctggaccaaaaggagaacctggaatacctggggagcag
ggaccatttggcccaaggggtcccaagggcgaaccaggcaagaatgaaatggtagattat
aatggcaatatcaatgaagctttgcaggagatacggaccttggcccttatgggacctcct
ggactacctggagttgcaggaccaccaggtccaccaggacagaagggtgaagttggcctg
ccaggtcctcctggacatgatggagaaaaggggccacgaggcaaaccaggagagatgggg
cctcctggtcccaaaggacctcctgggaaagatggacctccaggaatgaagggagaaatt
ggctccatggggaccacaggagcaaaaggagaaaagggggagactggacaggctggctca
ccaggtcttgatggcctaacaggagaaaaaggtgatcgagggatgccaggaccaccaggt
ctaccaggtccaattgggcttccaggttttacaggagagaagggagaacctggagagagg
ggcgacacaggagatacagtaactgggccaccagggccacaaggcccaccaggaacacca
ggtgttcaaggccttccgggaccgaagggagaagcaggcgttgatggaatgaaaggtgaa
aagggtgccttgggagaaaaaggagaccgaggtccgctgggattgcccggtgcttcaggt
ttagacggcaggcctggcccaccgggtactccaggaccaattggagttccaggaccagca
ggaccaaaaggagagaggggcaataaaggagatcctggaactgcaggaccaatagggcca
gcagggcttcctggtttaccaggttcaccaggggaaaagggaaatcggggggaaaggggc
aagaaaggttctagagggcctaaaggggataagggagaccaaggagcacctggattagat
gcaccctgtccattgggtgaagatggcttgccaattcaaggatgctggaataagggtcaa
actccttggctgatagccaaataa
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