Staphylococcus aureus subsp. aureus TCH60: HMPREF0772_10016
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Entry
HMPREF0772_10016 CDS
T01889
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
suq
Staphylococcus aureus subsp. aureus TCH60
Pathway
suq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
suq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0772_10016 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
suq03400
]
HMPREF0772_10016 (mfd)
Enzymes [BR:
suq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0772_10016 (mfd)
DNA repair and recombination proteins [BR:
suq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0772_10016 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Glyco_hydro_115
UB2H
AAA_22
SNF2-rel_dom
IstB_IS21
DUF3105
Motif
Other DBs
NCBI-ProteinID:
ADQ75478
LinkDB
All DBs
Position
complement(21186..24692)
Genome browser
AA seq
1168 aa
AA seq
DB search
MTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQ
ADKLETDLLQFVDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPL
NGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIID
IFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEEL
KTAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIDYFQKD
AIIAVDEFNRIKETEESLTVESDSFISNVIESGNGFIGQSFIKYDDFETLIEGYPVTYFS
LFATTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLVETETKVERMQA
MLSEMHIPSITKLHRSMSSGQAVIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKRT
KAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKLQYKGTDQLFVP
VDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQ
YGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAA
FKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTG
FVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRT
LHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSI
YEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANT
LIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSG
FKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVD
LNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIVE
IKVHALHSGITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTIT
LTKQNQWLDSLKFLVKCIEESMRISDEA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacaatattgacaacgcttataaaagaagataatcattttcaagaccttaatcaggta
tttggacaagcaaacacactagtaactggtctttccccgtcagctaaagtgacgatgatt
gctgaaaaatatgcacaaagtaatcaacagttattattaattaccaataatttataccaa
gcagataaattagaaacagatttacttcaatttgtagatgctgaagaattgtataagtat
cctgtgcaagatattatgaccgaagagttttcaacacaaagccctcaactgatgagtgaa
cgtattagaactttaactgcgttagctcaaggtaagaaagggttatttatcgttccttta
aatggtttgaaaaagtggttaactcctgttgaaatgtggcaaaatcaccaaatgacattg
cgtgttggtgaggatatcgatgtggaccaatttcttaacaaattagttaatatggggtac
aagcgggaatctgtggtatcgcatattggtgaattctcattgcgaggaggtattatcgat
atctttccgctaattggggaaccaatcagaattgagctatttgataccgaaattgattct
attcgggattttgatgttgaaacgcagcgttccaaagataatattgaagaagtcgatatc
acaactgcaagtgattatatcattactgaagaagtaatcagccatcttaaagaagagtta
aaaactgcatatgaaaatacaagacccaaaatagataaatcagtgcgcaatgatctgaaa
gaaacgtatgaaagctttaaattattcgaaagtacatactttgatcatcaaatactacgt
cgtttagtagcgtttatgtatgaaacaccttcgacaattattgattatttccaaaaagat
gcaatcattgcggttgatgaatttaatcgtattaaagaaactgaagaaagtttaacagta
gagtctgattcgtttattagcaacgttattgaaagtggtaatggatttataggacaaagt
tttataaaatatgatgattttgaaacattgattgaaggctatcctgtcacttatttttca
ttattcgctacaacaatgccgataaaactaaatcatattattaaattttcatgtaaacct
gtccaacaattttatgggcaatatgacattatgcgttctgaatttcaacgatatgttaat
caaaattatcatatcgtggttttggtcgaaaccgaaactaaagttgaacgtatgcaagcg
atgttaagtgaaatgcatattccatcaataacaaaattgcatcgctcaatgtcatcgggg
caagcagtgattattgaaggcagtttatctgaaggatttgaactacctgatatgggatta
gttgtcattactgaacgtgagctttttaaatcaaaacagaaaaagcaacgaaaacgtacg
aaagctatctcaaatgctgaaaaaattaagtcttaccaagatttaaatgtgggagattat
attgttcatgtgcatcatggtgttggtagatatttaggtgttgagacgctcgaagtaggg
caaatacatcgtgattatattaaattgcaatataaaggtacggatcaactatttgttcca
gtagatcaaatggatcaagttcaaaaatatgtagcttcggaagataagacgccaaaatta
aataaactcggtggcagtgaatggaaaaaaacaaaagctaaagttcaacaaagtgttgaa
gatattgctgaagagttgattgatttatataaagaaagagaaatggcagaaggttatcaa
tatggggaagacacagctgagcaaacaacatttgaattagattttccatatgaacttacg
cctgaccaagcgaaatctatcgatgaaattaaagatgacatgcaaaaatcgcgtccaatg
gatcgcttgctatgtggtgatgttggttatggtaaaactgaagttgcagtgagagcagca
ttcaaagctgtaatggaaggaaagcaggttgcatttttagttcctacaactattttagct
cagcaacattatgagacgttaattgagcgtatgcaagattttcctgttgaaattcaatta
atgagtcgttttagaacgccaaaagagataaaacaaactaaggaaggacttaaaactggg
tttgttgacatagttgttggtacacacaaattacttagtaaagatatacagtataaagat
ttagggctgttgattgtagatgaagaacaacgatttggtgtacgccataaagagcgtatt
aaaacattaaaacataatgtagatgtactaacattgactgcaaccccaatacctagaaca
ttgcatatgagtatgctaggtgtgcgcgatttgtcagtgattgaaacgccgccagaaaat
cgtttcccagttcaaacatatgtattagaacagaacatgagttttatcaaagaagcttta
gaaagagaactatcccgtgatggccaagtattttatctttataataaagtgcaatccatt
tatgaaaaacgagaacaactccagatgttaatgccagatgctaacattgcagttgctcat
ggacaaatgacagagcgcgatttagaagaaacgatgttaagttttatcaataatgaatat
gatattttagtaacgacgacgattattgaaacaggtgtcgatgtcccaaatgcaaatact
ttgatcattgaagatgcagatcgctttggattgagtcagttgtatcaattaagaggtcgt
gttggtcgttcaagtcgtattggttatgcatacttcttacatccagcaaataaggtacta
actgagactgcagaagatcgattacaagcgattaaagaatttacggagttaggctcagga
tttaagattgcgatgcgtgatttgaacattcgtggtgctggtaatttgttaggtaaacaa
cagcacggctttattgatacagttggatttgatttgtacagtcaaatgttagaagaagct
gtaaatgaaaaacgtggtattaaggaaccagaatctgaggtgccagaagtcgaagttgat
ttaaacttggatgcatatttgccaacagaatatattgcaaatgaacaagctaaaattgaa
atttataaaaagctaagaaaaactgaaacatttgatcaaattatcgacataaaagatgaa
ttaattgatcgtttcaatgattatcctgttgaagtagcacgtttgcttgatatagtggaa
ataaaagtacacgcattacattcaggtatcacgttgattaaagataaagggaaaataatt
gatattcatttatctgtaaaagccactgaaaatattgatggcgaagtgctgttcaaagca
acacaacctttaggtagaacaatgaaggttggtgttcaaaataatgcaatgacaattact
ttaacgaaacaaaatcaatggcttgatagtttgaagtttttagttaagtgcattgaagaa
agtatgagaatcagtgatgaagcataa
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