Candidatus Solibacter usitatus: Acid_3033
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Entry
Acid_3033 CDS
T00412
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sus
Candidatus Solibacter usitatus
Pathway
sus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Acid_3033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sus03400
]
Acid_3033
Enzymes [BR:
sus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Acid_3033
DNA repair and recombination proteins [BR:
sus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Acid_3033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABJ84012
UniProt:
Q022T8
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All DBs
Position
3832244..3834175
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AA seq
643 aa
AA seq
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MVIARKTKPRGVPTEPVPGPIRSSTHKIGELMARFPEVQLATLVAAVPTGENWVQEIKFD
GYRLLGFRWQQSVRLITRNGKDWTESFPSLSAALSGLAVDSAVLDMEAVVLDGRGKSSFQ
ALQNALGEGGDRRRIVAYVFDLLYLNGRDLTKLTLLERKEQLETILGTFKILRYSNHVIG
QGEEMLAKACEAGLEGIISKEANAAYLPGRSRNWLKIKCSLRQEFVIVGYSDPRKGGRAL
GALYLGYRKNGALQYAGKVGTGFTMKSARELTDRLSRISVHAPVLSRTQAAGLGAGEWRA
VHWVKPIMLCEVAFTEWTGDGRIRHPSFQGLREDKSASEVKKEMPVAPKDKTKAIEGKKV
LHGITITHPERVISDTGQITKGELAEYYAAVAPWMLPHIARHPLSLLRCPAGIDKQCFFQ
RNPGKGLGADVHPFEFKNKGKTYEYLYIEDEAGLLEVIQMGAVELHPWGASIDSIDYPDR
MIFDLDPAPEVPFEALKLAAQDLRKRLQRNGLESSLKCTGGKGLHVTVPLAATDSWSMVK
RFAASIADEMVAATPEAYVATMSKAKRTGRIFIDYFRNDYTATAIADYSVRARPGAPVAL
PIDWKELKNLESASQFTMKDVLSRLRRKKKTPAALFRYTIPAG
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
gtggtcattgccaggaaaacgaaaccgagaggcgttcccaccgaacctgtgcctggacca
attcgttcctccacgcacaaaattggcgagctcatggctcgattccccgaagtccaactg
gcaacacttgttgctgcggtccccacgggtgaaaattgggttcaggaaattaagttcgat
ggctatcgacttctcggatttcgttggcaacaatccgttaggctgattacgcgtaacggg
aaggattggactgaaagctttccttccctctcagctgcgctttcaggattagccgtggac
agcgcagtgttggacatggaagcggtggtcctcgatggcaggggtaaaagcagtttccaa
gctctgcagaatgcgctgggagagggcggggatcgccggaggatcgtcgcatatgtcttc
gatcttctgtatctcaacggaagagatttaaccaaactgacactgctggagcgcaaggag
cagctcgaaacgattcttggaacattcaaaattctccgttacagtaaccatgtcatcgga
caaggcgaagagatgctggcgaaggcctgtgaggccggactggaaggcatcatttcgaag
gaggccaacgccgcgtacttgccgggccgcagcaggaactggctcaaaatcaagtgttcc
ttgcgccaggagtttgtcatcgtgggatacagcgatccgcgaaaaggcgggcgagccctg
ggtgctctctacctcggctatcgcaagaatggtgctcttcagtatgcggggaaggtcggc
accgggtttacgatgaagagcgcccgggaactgactgatcgcctgagcaggatttcggta
catgcgcctgtgctaagccgcacccaggcagcgggacttggcgctggtgaatggcgcgcg
gtccattgggtgaagccgatcatgctgtgcgaagtcgcgtttaccgaatggactggagac
ggccgcattcggcacccttcttttcaaggtttacgtgaagacaagagtgcctctgaggtc
aagaaggagatgcccgtggcgcctaaggacaaaacgaaagcgatagaaggcaagaaagtc
ctgcacggaattacgattactcaccccgaacgcgtgatctccgataccggtcagatcacg
aagggtgaacttgccgaatattatgcggcggtcgccccgtggatgctcccgcacatcgcc
cgccatccgctaagcctcctgcgttgccccgcagggatcgataagcaatgtttcttccag
agaaacccaggcaaaggtctgggcgccgatgttcaccccttcgaattcaaaaacaaaggg
aagacgtacgaatatctgtatatcgaggatgaagcaggattgcttgaagtgatacaaatg
ggcgctgtcgaactccacccgtggggcgcttcgatcgattcgatcgattatccggatcgc
atgatcttcgatcttgaccccgcgcccgaagtgccgttcgaagcgttgaaactcgccgcg
caggatcttcgcaagcgcctccagcgtaacggcctggaatcatcactaaaatgcacggga
ggaaagggtctccatgtcaccgttccattagctgcgacggattcctggtcgatggtaaaa
cgctttgccgcttcgatcgcggacgagatggtagccgcaacgcccgaggcatatgtcgcg
acgatgagcaaagccaaaaggacgggtaggattttcatcgactatttccggaatgattac
actgcgactgcgatcgccgactattcggttcgagcgcgtcctggagcgcctgttgccttg
cccatcgactggaaggaactgaagaatttggaatcggccagtcaattcacgatgaaagat
gttctgtcacggttgaggagaaagaaaaagacacccgccgcgcttttccgctatacaatc
cccgcgggttag
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