Streptococcus vestibularis: NCTC12167_01510
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Entry
NCTC12167_01510 CDS
T07051
Symbol
deaD_2
Name
(GenBank) ATP-dependent RNA helicase, dead/deah box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
svb
Streptococcus vestibularis
Pathway
svb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC12167_01510 (deaD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svb03019
]
NCTC12167_01510 (deaD_2)
03009 Ribosome biogenesis [BR:
svb03009
]
NCTC12167_01510 (deaD_2)
Enzymes [BR:
svb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC12167_01510 (deaD_2)
Messenger RNA biogenesis [BR:
svb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC12167_01510 (deaD_2)
Ribosome biogenesis [BR:
svb03009
]
Prokaryotic type
rRNA helicases
NCTC12167_01510 (deaD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VED89107
LinkDB
All DBs
Position
1:complement(1531696..1533285)
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AA seq
529 aa
AA seq
DB search
MKFTDLNLSEDIQSAVVAAGFEKPSPIQELTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
NKIRTEENTIQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGA
HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEMLNMGFLEDIEAIISRVPEERQTLLF
SATMPDAIKRIGVQFMKDPEHVKIKAKELTNVNVDQYFIRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQSGQSITFVAPNEMGYLGIIENLTKK
RMKGLKPPTAQEAFQAKKKVALKKIERDFADEAIRSNFDKFKGDAVKLAQEFTPEELALY
ILSLTVQDPEMMPEVEIAREKPLPFKPSGGGFGGKGGKGGRGNRGRDNSRRGGGYRGDRN
RDDRDGGRRDFKRKSKKNSRDFENHGNKRPHRTSSEKKNGFVIRNKGDK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagatttaaacctatcagaagacatccaatcagctgttgtagctgccggt
tttgaaaagccatcacctatccaagagttgacaattccactcgctcttgaaggtaaggat
gttatcggtcaggcccaaactggtactggtaaaacagctgcctttggtctgcctacccta
aataaaattcgtacagaagaaaatacaatccaagctcttgttattgccccaacacgtgag
ttggcagtgcaatctcaagaagagcttttccgttttggtcgtgacaaaggtgttaaggtt
cgctcagtctacggtggttctagcattgaaaaacaaatcaaggccctccgttcaggtgcc
cacatcgttgtagggacaccaggtcgtcttcttgaccttatcaaacgtaaggctcttaaa
ctcaataatatcgagactttgattttggatgaagctgatgaaatgcttaacatgggcttc
cttgaagacattgaagctatcattagccgagtaccagaagaacgtcaaacccttctcttc
tcagcaactatgcctgatgctatcaaacgtattggcgttcagttcatgaaagatcctgag
catgtgaaaatcaaggctaaagaattgaccaatgttaacgttgaccaatactttatccga
gtgaaggaacaagagaagtttgatactatgactcgccttatggacgttgaccaaccagaa
ttgtcaattgtctttggtcgtaccaaacgtcgtgtggatgagttgacacgtggtttgaaa
cttcgtggtttccgtgcagaaggtatccacggagaccttgaccaaaacaaacgtcttcgt
gttatccgtgacttcaagaacgaccaaatcgatatcttggttgccacagacgttgcggcg
cgtggtcttgacatctcaggtgttactcacgtctacaactacgatattccacaagaccca
gaaagctacgttcaccgtattggacgtacaggtcgtgcaggccaatcaggtcaatcgatt
actttcgttgctccaaacgaaatgggttacttggggatcatcgaaaacttgactaagaaa
cgcatgaaaggccttaagccaccaacagctcaagaagccttccaagctaagaagaaagtt
gcccttaagaaaatcgaacgtgactttgcggatgaagctatccgttctaactttgacaag
ttcaagggtgatgcggttaaattggctcaagaattcacacctgaagaattggcactttac
atcttgagcttgaccgttcaagacccagagatgatgccagaagtggaaattgcccgtgaa
aaaccattgccattcaaaccatcaggtggtggctttggtggtaaaggtggcaaaggtggc
cgtggcaaccgtggtcgtgataacagccgtcgtggtggtggataccgtggcgaccgtaac
cgcgatgaccgagacggtggccgtcgtgacttcaaacgcaagtctaagaagaatagccgt
gacttcgaaaaccatggcaacaaacgcccacaccgtacctcaagcgaaaagaaaaacggc
tttgttatccgtaacaagggtgataaataa
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