Saccharomonospora viridis: Svir_07780
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Entry
Svir_07780 CDS
T00980
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
svi
Saccharomonospora viridis
Brite
KEGG Orthology (KO) [BR:
svi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svi03019
]
Svir_07780
Enzymes [BR:
svi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Svir_07780
Messenger RNA biogenesis [BR:
svi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Svir_07780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
ResIII
AAA_30
AAA_19
AAA
AAA_28
AAA_11
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ACU95841
UniProt:
C7MWI2
LinkDB
All DBs
Position
complement(803032..805524)
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AA seq
830 aa
AA seq
DB search
MSGLDTLVLPDLPVRAVLDDVTTALRARGTAVLVAPPGTGKTTLVPLALARETEGTVVVA
EPRRLAARAAAARMAALLGEPVGETVGYSIRGDRRVSDRTRVEVVTSGLLVRRLQHDPEL
HRTSVVLLDECHERHLDADLLLALLLDARAGLRDDLRLLATSATVASERLAALLGDAPVI
TAHAAVHPVDVVHRPPDRGERIEACVARTVRTALSEREGNILVFLPGVAEIARVAALLDG
VDADVVSLHGRLSPQRQDAALRPGPRRRVVLATAVAESSLTVPGVRVVVDSGLARVPRVD
HRRGLPGLTTVRVSRAVADQRAGRAGREAPGTVYRCWPHSEHASLPAYPEPEIRTAELSR
LALELACWSTPDGSGLAWWDPPPEGALTAGRNLLRTLGAVDDAGRPTDRGLRMAALGLHP
RLARALLDGAAELGARPAAEVVAVLDAGATHTDLDTELSRLRRADDTAAQRWRREVDRLT
ALVSRDRDGKAAQDTTVEDGEAESGHPPPDSATVVALAYPERLARRRRSTASPVYLLANG
TAVETPPGSGLGDSEWLAVAEATREPGRAHGVVRLAATADEELAVRAGAALLSERDEIAW
LDGDVVSRRVRRLGAITLTERPIPDPDPAAVRQAVVAGLRQEGLRLLPWPTEATRLRQRL
AFLHRHVGAPWPDVSDEALVSHPDAWLAPELGRIRRRSDFADIDTAAALRRLLPWPEASR
FDELAPDRLEVPSGSRVRVDYSGDEPVLAVKLQETFGWRTTPRISDGRVPVVLHLLSPAG
RPAAVTSDLESFWRTGYAAVRAELRGRYPKHPWPSDPLTAEPTKGTNRRR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgggctggacactctggtgttgcccgaccttccggtgcgcgccgtactcgacgac
gtgaccaccgcgctacgggcacggggcaccgccgttttagtggcacccccgggtacgggg
aagacgactctcgtcccactcgccctggcccgcgaaaccgagggcaccgtcgtggtcgcc
gagcctcgcagactcgccgcgcgggcggccgccgcgcgcatggcggcgctgctgggcgaa
ccggtcggcgaaaccgtcggctactcgatacgaggcgaccgcagggtctcggaccgcacc
cgggtggaggtcgtcacctcgggactgctcgtacgacgcctgcagcacgatcccgaactg
caccgcacctcggtggtgctgctcgacgaatgccacgaacgccatctcgacgccgacctc
ctactggccctgctgctcgacgccagagcggggctgcgggacgatctacggctgctcgcc
acgtcggccaccgtggcttccgagcggctggccgcactgctcggcgacgcaccggtcatc
acggcgcacgccgcagtgcatcccgtcgacgtcgtgcaccggccacccgaccggggcgag
cgcatcgaggcgtgcgtcgcgaggaccgtccgaacggcactgtccgagcgtgaggggaac
atcctcgtcttcctgcccggcgtcgccgagatcgcccgtgtggccgcgttactcgacgga
gtcgacgccgacgtcgtgtccctgcacggtcgactgtccccacaacgtcaggacgccgcg
ctgagaccggggccacggcgacgggtcgtgttggccacggcggtggccgagtcgagtctg
acggtgcccggcgtgcgcgtggtggtggactccgggctggcccgggtgcccagggtggat
catcgccgtggcctgccgggactgaccaccgtgcgagtgtcgcgggccgtggctgatcag
cgtgcgggccgggcgggacgggaggcccccggcaccgtctaccggtgctggccgcactcc
gaacacgcgagtctgcccgcctaccccgaaccggagatccgcaccgccgaactctcccga
ctggcattggaattggcatgttggtccactccggacggttcgggactggcctggtgggat
ccaccgcccgagggggcgttgaccgcgggtcggaatctgctgcgcacgttgggggccgtg
gacgatgccggacgtccgaccgaccgcggtctgaggatggcggccctgggcctgcaccct
cggctggctcgcgcgctgctcgacggggcggccgagctcggcgcgcgcccggccgccgaa
gtggtggcggttctcgacgccggagcgacccacaccgatctcgacaccgagctgtcccgc
ctgcgtagagcggacgacacggccgcgcagcggtggcggcgggaggtcgacaggctcacg
gcgctcgtgtcccgcgaccgggacggcaaggccgcccaggacaccaccgtcgaggacggc
gaagccgaaagcggacaccccccaccggactccgccaccgtggtggccctggcctatccc
gaacgactcgcacgccgtcgacgaagcaccgcttcaccggtgtatctgttggccaacggt
acggcggtggagactccgcccggcagcggactcggcgacagcgagtggctggcggtggcc
gaggcgacccgggaaccggggcgggcacacggcgtcgtccggctcgccgcgacagcggac
gaggaactggcggtgcgtgccggcgctgcgctgctgagcgagcgcgacgagatcgcgtgg
ctcgacggcgacgtcgtctcccgacgcgtacggcgactgggcgccatcacactgaccgaa
cgtccgataccggaccccgatccggccgccgtccgccaagccgtggtggccgggttacgg
caggaaggactgcgcctgctgccctggcccaccgaagcgacgcggctgcggcaacgcctg
gcgttcctgcaccggcacgtgggtgccccgtggcccgacgtctccgacgaggccctcgtg
tctcatccggacgcatggctggccccggagttggggcgtatacgccgtcgctccgacttc
gcggacatcgacacggccgccgcgttgcgcagactgttgccctggcctgaggcctcccgg
ttcgacgaactcgcccccgaccggctggaggtcccgtcgggctcccgggtacgcgtggac
tactccggcgacgaaccggtgctcgcggtgaagttgcaggagacgttcggttggcggacc
acgccgcgcatctcagacggcagggtacccgtggtgttgcacctgttgtcgccggcgggc
aggcccgcagcggtgacgtcggatctggaatcgttctggcgcaccggctatgcggcggtg
cgcgccgaactccgcggccggtatccgaaacacccctggccctccgaccccctcacggcc
gaaccgacgaagggcaccaaccgacgccgctga
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