Shewanella violacea: SVI_0052
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Entry
SVI_0052 CDS
T01206
Symbol
fadB-1
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
svo
Shewanella violacea
Pathway
svo00071
Fatty acid degradation
svo00280
Valine, leucine and isoleucine degradation
svo00310
Lysine degradation
svo00362
Benzoate degradation
svo00380
Tryptophan metabolism
svo00410
beta-Alanine metabolism
svo00640
Propanoate metabolism
svo00650
Butanoate metabolism
svo00907
Pinene, camphor and geraniol degradation
svo00930
Caprolactam degradation
svo01100
Metabolic pathways
svo01110
Biosynthesis of secondary metabolites
svo01120
Microbial metabolism in diverse environments
svo01200
Carbon metabolism
svo01212
Fatty acid metabolism
Module
svo_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SVI_0052 (fadB-1)
00650 Butanoate metabolism
SVI_0052 (fadB-1)
09103 Lipid metabolism
00071 Fatty acid degradation
SVI_0052 (fadB-1)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SVI_0052 (fadB-1)
00310 Lysine degradation
SVI_0052 (fadB-1)
00380 Tryptophan metabolism
SVI_0052 (fadB-1)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SVI_0052 (fadB-1)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SVI_0052 (fadB-1)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SVI_0052 (fadB-1)
00930 Caprolactam degradation
SVI_0052 (fadB-1)
Enzymes [BR:
svo01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SVI_0052 (fadB-1)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SVI_0052 (fadB-1)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SVI_0052 (fadB-1)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
SVI_0052 (fadB-1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
BAJ00023
UniProt:
D4ZDA1
LinkDB
All DBs
Position
complement(53394..55547)
Genome browser
AA seq
717 aa
AA seq
DB search
MIYQSPTIQVELLEDNIARLCFNAPGSVNKLDRETINSLNAALDAIQQNSDIQALVLTSG
KGAFIVGADITEFLGLFAQDDSVLLPWIAEANVVFNKLEDLPFPTISAINGFALGGGFET
VLATDFRIADTTARVGLPESKLGLVPGFGGTVRLPRLIGADNALEWITSGKDQRPEAALK
VGAIDAIVAPENLQASAIQMLKDAVAEKLDWQTRRARKQAPLTLPKLEAMMSFATAKGMV
FKIAGKHYPAPMTAISVIEKAANLGRDEALKIEHQAFVKLAKTDVTQALIGIFLNDQLVK
GKAKKAGKLAKKVDTAAVLGAGIMGGGIAYQSASKGTPIVMKDIAQPALDLGLGEASKLL
AAQIKRGRSTPEKMAKVLNNITATLDYAPVKDVDLVVEAVVEHPKVKSMVLAEVEQHVAD
DAIITSNTSTISINLLAKALNKPERFCGMHFFNPVHKMPLVEIIRGENSSEETIATVVAY
ASKMGKTPIVVNDCPGFFINRVLFPYFAGFCGLLADGGDFAAIDKVMEKQFGWPMGPAYL
LDVVGLDTGHHAQAVMAEGFPDRMAKDGKDAIDIMFGAERFGQKNSKGFYAYSVDRRGKP
KKDVDAVSYELLGAEFGELKQFESDEIIARTMIPMIIETVRCLEEGIIASPAEADMGLVY
GLGFPPFRGGVFRYIDTMGVANFVALADKYAHLGGLYQVTDAMRELAANNGSYYQSK
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgatctaccaaagtcctacgattcaggttgagttacttgaagataatatcgctcggcta
tgctttaacgcaccgggttcagtcaacaagttagatagagaaacgattaactctcttaac
gctgcactcgatgcaatccagcaaaattcagacatccaagctctagtcctgacttcaggt
aaaggcgccttcatcgttggcgccgacatcactgaattcttaggcttgttcgcccaagac
gatagtgtgctactcccttggatagctgaagcgaatgtcgtatttaataagttagaagat
cttccctttccaactatctcagccatcaacggctttgcactaggtggcggtttcgaaacc
gtactagctaccgacttccgtattgccgataccacagcaagagtgggattacctgagtct
aagctaggactggttccaggttttggaggcacggttcgcttgccacgtctaatcggtgcg
gataacgcgctcgagtggatcactagcggtaaagaccaacgtccggaagcggcgcttaaa
gtcggcgctatcgacgcaatcgttgccccagaaaatttacaagcttcagccattcagatg
ctcaaggatgcagtcgcagaaaaactcgattggcagactcgccgcgctcgaaagcaggct
ccactgacactgcctaagctagaagccatgatgtcattcgccactgccaaaggcatggtt
ttcaagatagcgggcaagcattacccggcacctatgacagccatcagcgtcatagaaaaa
gccgctaaccttgggcgagatgaagcccttaagatagaacatcaggcctttgttaagctg
gccaagacagatgtgactcaggcattgatcggtatcttcctcaatgatcagctagtaaaa
ggtaaggctaagaaggccggtaaactggctaagaaagtcgacacggctgccgtactaggt
gcaggcatcatgggtggcggtatcgcctaccagagtgccagtaaaggcactcctatcgtc
atgaaagatattgcacagccagctctggacttaggtctgggtgaagcatctaagctgctt
gcagcgcaaattaaacgtggtcgctctacaccagagaagatggctaaggtacttaacaac
atcacagcgactctggactatgctccggtcaaagatgtcgaccttgtcgtcgaagccgtt
gtcgagcaccctaaagtcaaatctatggtactggccgaagttgagcagcatgttgccgac
gacgccatcatcacctctaatacatctaccatctcgataaacctgctagctaaggcgcta
aacaagcctgagcgtttctgtggcatgcacttcttcaacccggtacataagatgccactg
gttgaaattattcgtggtgagaacagctcggaagagacgattgcgactgtagtcgcttac
gccagcaagatgggtaagacacctatcgtagttaatgattgtcctggcttcttcattaac
cgtgtgctgttcccttactttgcaggtttttgtggcctactcgccgatggcggtgatttc
gccgctatcgataaggtaatggaaaaacagtttggttggcctatgggcccagcataccta
ctggatgttgtcggtttagacacgggtcatcacgcacaggccgttatggctgaaggcttc
ccggatcgcatggcgaaagatggcaaagatgctatcgatatcatgttcggagctgaacgc
ttcggtcagaagaacagcaaaggtttctatgcttactctgtcgaccgtcgtggcaagccg
aagaaagatgtcgatgccgttagctatgaactgctaggtgccgaatttggcgaacttaag
caattcgagtccgatgagatcatcgcccgcactatgatccctatgatcatagaaaccgtg
cgttgtctcgaagaaggcattatcgcttcacctgctgaagcggatatgggtctggtttac
ggtctaggtttcccaccattccgaggcggtgtattccgctatatagataccatgggcgtc
gcaaacttcgtcgctctcgccgataaatatgctcacttaggtggcctatatcaagtaaca
gatgccatgcgtgaacttgccgcaaacaatggcagctactaccagtctaaataa
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