Shewanella violacea: SVI_1957
Help
Entry
SVI_1957 CDS
T01206
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
svo
Shewanella violacea
Pathway
svo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
svo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVI_1957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
svo03019
]
SVI_1957
Enzymes [BR:
svo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SVI_1957
Messenger RNA biogenesis [BR:
svo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SVI_1957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAJ01928
UniProt:
D4ZJS9
LinkDB
All DBs
Position
2244604..2245950
Genome browser
AA seq
448 aa
AA seq
DB search
MSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLPML
EMLARGENQRKKRIRALILTPTRELAVQVCTSIEAYGKYLNLKALAVYGGVDYGPQKQAL
IEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRMLDMGFIEDITKIIDTLPEDRQ
NLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKDKKSALLSHLIKE
NSWPQALIFIETKHGAAKLVAQLEKRGIEADCIHSGRAQAIREQILADFKTGKIKYLIST
GISARGIDIDDLPLVINYDLPYPADEYVHRIGRTGRAGAAGEAISLVSKDDFKNLCMIER
RLDLLIERKVVEGFEPRKEVPVSVLNFVPKNMPDRDDSKDNRPKPKDKRSASKSSASTRG
SSRTSASKQTDNKVSSADNKLPLNPWGR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttctaatcttggattaagcgatccgattttaacatctctagccgagttaggt
tattcatcgccaacgcctattcaagccgaagctattcccctggcgcttaaaggcaagaat
ttaattgcggcagcccagacgggcagcggtaagacagccacattcgtattgcctatgctt
gaaatgttggcaagaggggaaaaccaacgtaaaaaacgtattcgagcactgattctaact
cccacaagagagctagcggttcaggtctgtaccagtatagaggcctatggtaagtacctt
aatcttaaggcgctggcagtatatggtggcgtcgattacgggccgcagaaacaggctttg
atagaaggcatagacatagtcgtcgccactccgggtcgcttgagagatttgtatactcaa
agatcgattcatttcgatgaaatcgaaatgttagtgctcgatgaagccgacagaatgttg
gatatgggatttatcgaagatatcactaagatcatagataccttaccggaagacagacaa
aatctcttgttctcggcgaccttatctcgtcaggtgagagaactcgccaaagagacgatc
cctaatgccatccagctctccgtcactaagaaaagtgaaggtaagcccaatattgaccag
tggttagtgacggtggataaagataagaagtcggcgttactgagccatctgatcaaagag
aacagctggccccaggcgcttatttttatcgagactaaacacggcgccgctaagctcgtt
gctcagcttgagaaacgcggcattgaagccgattgtattcacagtggtcgtgctcaggcc
attcgagagcagatcttggcggatttcaaaactggcaagataaagtatcttatctcaact
gggatctcagctcgcggcatagatatcgatgatctaccgttagtgatcaactatgacttg
ccatatcctgccgatgagtacgtgcatcgtatcggtcgtaccggacgtgcgggcgccgcc
ggtgaggcgatatctctggtgtctaaagatgatttcaagaatctgtgcatgattgaaagg
cgtctggatctcttgatcgagagaaaagtagttgaaggttttgagccacgtaaagaagta
cctgtctcagtattgaatttcgtgcctaagaatatgcccgatagagatgattcaaaggat
aataggcctaagccaaaagataagcgctcggcttcgaaatcaagtgcgtcgactcgcggc
tcaagcagaacatcggcatctaagcaaactgacaataaagtcagctcagcggataacaag
ttaccgcttaatccctggggccgataa
DBGET
integrated database retrieval system
