Rhizorhabdus wittichii RW1: Swit_3449
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Entry
Swit_3449 CDS
T00538
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
swi
Rhizorhabdus wittichii RW1
Brite
KEGG Orthology (KO) [BR:
swi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
swi03019
]
Swit_3449
Enzymes [BR:
swi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Swit_3449
Messenger RNA biogenesis [BR:
swi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Swit_3449
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
AAA_19
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABQ69795
UniProt:
A0A9J9HDN5
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All DBs
Position
3785218..3787662
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AA seq
814 aa
AA seq
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MLPIDAVLPDLIAALRDGPNAVLVAPPGAGKTTAVAPALLGQEWCEGQILLLSPRRLAAR
AAAERMAELAGEPVGRTIGYATRLDARQSAATRILVVTEGIFVNRIQADPDLPGVSAVLF
DEVHERSLDSDFGLALALDAQAALRPDLRLVAMSATLDGGRFAALMGAAPLVESEGRSHP
IEIRHAPRSAEKRIEDDMAATIRRALAEEGGSLLAFLPGVAEIERTAERLEAGLPGDVVL
HRLHGSLEPAEQRAAIAPAPPGKRKLVLATSIAETSITIDGLRIVVDSGLARRPRYDRAA
GMTRLVTERASQAAATQRAGRAGRQQPGVVYRLWEAAATAGLPKYDPPEILETDLSALTL
DCALWGVADPGTLRWLDPPPEAAIGEARQRLARLEAIDEDGRPTAHGRAIAALPLPPRLG
HMLIRAAEGGFAETAAEVAVLLSERGLGGSDADLELRLRRWRGERGKRAEGARQLAGRWA
RLAGKGGRDDAMIADCVALAYPDRVARRRSASGEDWISRGGRGFRLDPASPLARNEWLAV
AEIQGAASGARILSAAPIDPDEVERLFADHIEVRRTARFDPATGAVEARRERRLGAILLA
AGRDETASPAMIGAALIDAVRTRGLDLIDWSEGAAALRARAAFAAEQGGELPDLSDATLM
LTLDDWFAPLVEGKRRLSDISAAELSNALHGLLGWDGRQALDRLAPEHLQSPAGSRHAID
YAAEGGPAVEVRPQALFGLSAHPMVAGGRVPLTLRLTSPAGRPIQTTKDLPGFWAGSWTA
VAKEMRGRYPRHPWPDDPAAADPTLRTKKAAQRP
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgctgccgatcgacgccgtcctgcccgacctgatcgccgcgcttcgcgacgggccgaac
gccgtgctcgtcgccccgccgggcgcgggcaagacgacggcggtggcgccggcgctgctc
gggcaagagtggtgcgagggacaaatcctgttgctctccccccgccgcctcgccgcccgc
gccgcggccgagcggatggccgagctggccggcgagccggtcggccggacgatcggctat
gccacccggctcgacgccaggcagtcggccgccacccgcatcctcgtcgtcaccgagggc
atcttcgtcaaccgcatccaggccgatcccgacctgcccggcgtctcggcggtgctgttc
gacgaggtccatgagcgcagcctcgacagcgatttcggcctcgccctcgcgctcgacgcg
caggcggcgctgcggcccgacctgcgcctcgtcgcgatgtcggcgacgctcgacggcggg
cgcttcgcagctctcatgggcgccgcgccgctggtcgaaagcgaggggcgcagccacccg
atcgagattcgccatgccccgcgatcggccgagaagcggatcgaggacgacatggcagcg
acgatccgccgcgcgctggcggaggagggcggcagcctgctcgccttcctccccggcgtg
gcggagatcgagcgcaccgccgagcggctcgaagcggggttgcccggcgacgtcgtcctc
caccggctgcacggctcgctcgaacccgccgagcagcgcgcggcgatcgcgcccgcgccg
ccgggcaagcgcaagctggtgctcgccacgtcgatcgcggagaccagcatcaccatcgac
gggctgcgcatcgtcgtcgattcggggctcgcccgccggccgcgctacgaccgcgcggcg
gggatgacccggctcgtcaccgaacgggccagccaggcggcggccacccagcgcgccggc
cgcgccgggcgccagcagccgggcgtggtctatcgcctgtgggaggcggcggcgaccgcc
ggcctgcccaaatatgacccgcccgagatattggagaccgacctgtcggcgctgacgctc
gactgcgcgctgtggggcgtcgccgatccgggcacgctgcgctggctcgatcccccgccc
gaggccgcgatcggcgaggcgcgccagcggctggcgcggctggaggcgatcgacgaggac
ggccgcccgaccgcgcatggccgggcgatcgccgcgctgccgctgccgccgcgcctcggc
catatgctgatccgcgccgccgagggcggcttcgccgagaccgcggccgaggtcgcggtg
ctgctttcggaacgcgggctcggcggctcggatgccgatctggagctcaggctgcggcgc
tggcgcggcgagcgcggcaagcgggccgagggcgcgcgccagctcgccgggcgctgggcg
cggctggcggggaagggcggccgcgacgacgcgatgatcgccgattgcgtcgcgctcgcc
tatcccgaccgggtcgcgcggcggcgctcggcctcgggcgaggactggatctcgcgcggc
gggcgcggcttccggctcgatcccgcctcgccgctggcgcgcaacgaatggctcgccgtc
gccgagatccagggcgcggcctcgggcgcgcgcatcctgtcggcggcgccgatcgacccc
gacgaggtcgagcggctgttcgccgatcatatcgaggtccgccgcaccgcccgcttcgat
cccgcgaccggcgcggtcgaggctcggcgcgagcgtcggctcggcgcgatcctgctcgcc
gccgggcgcgacgagaccgcctcgccggcgatgatcggcgccgcgctgatcgacgcggtc
cgcacccgcgggctcgacctgatcgactggtccgagggcgcggcggcgctccgcgcccgc
gccgccttcgcggccgaacagggcggcgaactgcccgacctgtccgatgcgacgctgatg
ctcaccctcgacgactggttcgcgccgctggtcgagggcaagcgccgcctgtcggacata
tcggcggccgagctgtcgaacgcgctccacggcctgctcggctgggacgggcgccaggcg
ctcgaccggctcgcgcccgagcatctccagtcgccggccggcagccgccacgcgatcgac
tatgcggccgagggcggcccggcggtcgaggtgcggccgcaggcgctgttcggcctgtcg
gcgcatccgatggtggcgggcgggcgggtaccgctcaccctgcggctgacctcgccggcc
ggccggccgatccagacgaccaaggacctgcccggcttctgggcgggaagctggaccgcg
gtcgccaaggagatgcgcggccgctatccccgccatccctggcccgacgaccccgccgcc
gccgatccgaccctgcggaccaagaaagcggcgcagcgtccttga
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