Sphingobium sp. YBL2: TZ53_20775 Help Entry TZ53_20775        CDS       T03855                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism syb  Sphingobium sp. YBL2 Pathway syb03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:syb00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     TZ53_20775  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:syb03400]     TZ53_20775 Enzymes [BR:syb01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      TZ53_20775 DNA repair and recombination proteins [BR:syb03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      TZ53_20775 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  AJR25818 UniProt:  A0A0C5XXI0 LinkDB All DBs Position complement(4496312..4498807) Genome browser AA seq 831 aa AA seqDB search MADADPLSTYNRKRDFTRTREPAGKRGRSHGNGNGFIVQKHDATRLHYDFRLEMDGVLKS WAVTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSA SDIEKGHLHFILHGQRMRGEWLLIRLKPRGREKGENWLLRKIEDAHAGSADELTARELTS IRSGRTMAEIAAGTPPMSLKGKRGKAFDAAMAQADRAVPAKRRAKAGTGRMPAFRPPQLA TLVDAVPTGNGWMHEIKYDGYRCLVSVSGGKVKIFTRSGLDWTDRFAPLPAEIGAMNLPA ALIDGEIVAPGSDGNPDFSTLQQVLKGEGKAALHLFAFDLLHLDGQDLTAMPNIGRKEKL AGLLGEGSAHVHVGDHVVGAGEKLFHAMCGAGQEGIISKRADAAYRGARTKNWLKVKCTR RQEFVIVGWTPSSASGRSIRNLLLGQREGDGLVYAGKVGTGFNAANSAGLIAALGKRGRK AAALSVPRSESKGAQWVRPDLVAEIAFAEFTAEHIVRHASFLGLREDKAAGDVRREEAMP TPEAHSSIRISNPDRLIFPEAKITKGELADYYARMGAAMLPWIVRRPISLVRCPQGRAKK CFFQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSEGLLACVQMGAIEFHGWGSSVADV ERPDRMIFDLDPDEGLDFEDVKKAARDIRRALEDLGLTSFAMLSGGKGIHVVVPLTPQAQ WPEVKDFADRFARALATQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRAREP ASVAAPVTWEELDGIDSAAHFTVKDAAVLLDRASSRDLRGWGEAHQPLPAH NT seq 2496 nt NT seq  +upstreamnt  +downstreamnt atggccgatgccgatccgctcagcacctataaccgcaagcgcgatttcacccgcacccgc gagccggcgggcaagcgcggacgcagccacggcaatggcaacggcttcatcgtgcagaag cacgatgcgacccgcctgcattacgacttccgcctggaaatggatggcgtgctcaagagc tgggcagtgacgcgcggccccagcatcgatcccgcggacaagcggctggccgtccgcacg gaggatcatccgctgtcctatgcgacgttcgaggggaccattcccaagggggaatatggc ggcggcaccgtgatgctctgggacgagggcacatgggaacccgttccgggcaagagcgcg agcgacatcgaaaaagggcatctccatttcatcctgcacgggcagcggatgcggggcgaa tggctgctgatccgactgaagccgcggggcagggaaaagggagaaaactggctgctgcgc aagatcgaggatgcccatgccggcagcgcggacgaactgaccgcgcgcgagctgacgagc atcaggagcggtcgcaccatggcggaaatcgccgccggcacgccgcccatgtcgctgaag gggaagaggggaaaagcctttgacgcggcgatggcgcaggccgaccgcgccgtcccggcg aaaaggcgcgccaaggcagggacgggccgcatgccggccttccggccgccgcaactggcg acgctggtcgatgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggg tatcgctgtctggtttccgtatcgggcgggaaggtcaagatctttacgcggtcgggcctc gactggacggatcggtttgcgccgttgccggcggaaatcggggcgatgaacctgcccgcc gccctgatcgatggcgaaatcgtcgcccccggcagcgatgggaatccggatttctccacg cttcaacaggtgttgaagggagagggaaaggcggcgctgcacctgttcgccttcgacctg ctgcatctggacgggcaggatctgaccgccatgcccaatatcggccgcaaggaaaagctg gccggcctgttgggggagggttccgcccatgtccatgtcggcgatcatgtcgtcggcgcc ggggaaaagctgttccacgccatgtgcggcgccgggcaggaggggattatttccaagcgc gccgacgccgcctatcgcggcgcgcgcacgaagaactggctgaaggtcaaatgcacccgc cgtcaggaattcgtcatcgtcggctggactcccagcagcgccagcggccggtccatccgc aacctgctgcttggccaacgggaaggggatggcctggtctatgcgggaaaggtcggcacg ggcttcaacgcggccaacagcgccggactgatcgccgccctgggcaagcgcgggcgcaag gccgccgcgctcagcgtgccgcgcagcgaaagcaaaggcgcccaatgggtccgccccgat ctggtcgctgaaatcgcctttgccgaattcacggcggagcatatcgtccgccatgccagc ttccttggcctgcgcgaggacaaggcagccggcgacgttcgacgcgaggaagccatgccg acgcccgaagcccatagctcgatccggatcagcaatcccgaccggctgatctttccggag gcgaagatcaccaagggcgagctggccgattattacgcccgcatgggcgcggcgatgctg ccctggatcgtccgccggccgatcagcctggtccgctgtccgcagggccgggcgaaaaaa tgcttcttccagaagcatgacagcggcagcttcggcgatcatgtcaaacatgtcccgatc cgcgagaaggaagggaatgaggaggattatctctatatcgaggatagcgagggattgttg gcctgcgtccagatgggcgcgatcgaatttcatggctgggggtccagtgtcgcggatgtg gagcggccggatcgcatgatcttcgacctcgatcccgacgaggggctggactttgaggat gtgaagaaggccgcgcgggacatccggcgggcgctggaggatctgggcctcaccagcttc gccatgctgtccggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaa tggccggaggtcaaggatttcgcggaccgcttcgcccgcgccctcgccacccaggaaccg gaccgcttcaccgcgacgatgagcaaggcgaagcgcaagggccgcatcttcatcgactgg ctgcgcaaccagcgcggcgcgacggctgtgctgccctatgtggtgcgcgcccgcgagccg gcttccgtcgccgcccccgtcacctgggaagagctggacgggatcgacagcgccgcgcac ttcacggtgaaggatgccgccgtcctgctggaccgcgcctcttcgcgggacctgcgcggc tggggcgaggcgcatcagccgctgccggcgcattag

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