Sphingobium sp. YBL2: TZ53_21000
Help
Entry
TZ53_21000 CDS
T03855
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syb03016
]
TZ53_21000
Enzymes [BR:
syb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
TZ53_21000
Transfer RNA biogenesis [BR:
syb03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
TZ53_21000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AJR25852
UniProt:
A0A0C5XT81
LinkDB
All DBs
Position
4544492..4545040
Genome browser
AA seq
182 aa
AA seq
DB search
MHRLFVAIRPPADIRAGLIALMNGINGARWQDDDQLHITLRFIGEVDRHQANDIADALAN
IRFSPFRTALSGVGCFDRKGHVNALWAGMEPRAPLARLHRKVDRACIAAGLSPDDRSYLP
HITLARFGRTAGPMDAFIALHAGLASAPFTVDEFALYESHLSQNGSTYHLIERYRADRDE
PE
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcctgttcgtcgccatacgcccgcccgccgacatccgcgccggcctcatcgcc
ctgatgaacgggatcaatggagcgcgctggcaggacgacgaccagttgcacatcaccctg
cgcttcattggagaggtcgaccgccaccaggccaatgacatcgccgacgcactggcgaat
atccgcttttcgcccttccggaccgcactgtccggcgtgggctgcttcgaccgcaagggc
catgtcaacgcgctctgggcaggcatggagccacgcgcacccctcgcccggcttcatcgg
aaagtggaccgcgcctgcatcgccgcgggcctgtcaccggacgatcgcagctatctgccg
cacatcaccctcgcccgcttcggacgcacggccggcccgatggacgccttcatcgccctt
catgccggcctggcaagcgccccattcaccgtcgatgagttcgccctctatgaaagccat
ctcagccagaacggctcgacctatcatttgatcgaacgctatagggcggacagggacgag
cccgaataa
DBGET
integrated database retrieval system