KEGG   Sphingobium sp. YBL2: TZ53_21000
Entry
TZ53_21000        CDS       T03855                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
syb  Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:syb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:syb03016]
    TZ53_21000
Enzymes [BR:syb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     TZ53_21000
Transfer RNA biogenesis [BR:syb03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    TZ53_21000
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: AJR25852
UniProt: A0A0C5XT81
LinkDB
Position
4544492..4545040
AA seq 182 aa
MHRLFVAIRPPADIRAGLIALMNGINGARWQDDDQLHITLRFIGEVDRHQANDIADALAN
IRFSPFRTALSGVGCFDRKGHVNALWAGMEPRAPLARLHRKVDRACIAAGLSPDDRSYLP
HITLARFGRTAGPMDAFIALHAGLASAPFTVDEFALYESHLSQNGSTYHLIERYRADRDE
PE
NT seq 549 nt   +upstreamnt  +downstreamnt
atgcaccgcctgttcgtcgccatacgcccgcccgccgacatccgcgccggcctcatcgcc
ctgatgaacgggatcaatggagcgcgctggcaggacgacgaccagttgcacatcaccctg
cgcttcattggagaggtcgaccgccaccaggccaatgacatcgccgacgcactggcgaat
atccgcttttcgcccttccggaccgcactgtccggcgtgggctgcttcgaccgcaagggc
catgtcaacgcgctctgggcaggcatggagccacgcgcacccctcgcccggcttcatcgg
aaagtggaccgcgcctgcatcgccgcgggcctgtcaccggacgatcgcagctatctgccg
cacatcaccctcgcccgcttcggacgcacggccggcccgatggacgccttcatcgccctt
catgccggcctggcaagcgccccattcaccgtcgatgagttcgccctctatgaaagccat
ctcagccagaacggctcgacctatcatttgatcgaacgctatagggcggacagggacgag
cccgaataa

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