Sediminicola sp. YIK13: SB49_06750
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Entry
SB49_06750 CDS
T04145
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_06750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_06750
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SB49_06750
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
HH_signal
FeoB_associated
Motif
Other DBs
NCBI-ProteinID:
ALM07534
UniProt:
A0A0S1SAZ6
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Position
complement(1530224..1531792)
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AA seq
522 aa
AA seq
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MDSTTIIIVGIVGLAIGFAIAKIMEKGKASKTIDSAKKEAASIIKEAELQGESTKKDKIY
QAKEKFLELKAEHEKVIISKDKKINEAEKRTRDKESQISNELAKSKKLNDQLEVKLKEVD
HKSEFLEKKQSELEKLHKSQVQQLEVISGLSAEDAKSQLMESLKENAKSDAMAFIQSTVE
EAKLTAQQEAKKIVINTIQRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEIVKKTEKQIEEEIV
EIGKRTVIDLGIHGLHPELIKAVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPKL
AKRAGLLHDIGKVPNTEAEVETPHAILGMQWAEKYGEKPDVCNAIGAHHDEIEMKTLISP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFGGVQKAYAIQAGRELRVIVESEK
VSDEKAAELSFEISQKIQTDMTYPGQVKVTVIRETRSVNVAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacagtactacaataataatagtaggtatagttggtctggcgattggttttgccatt
gccaagattatggaaaagggaaaggcttccaaaaccatagacagtgcaaaaaaagaagcg
gcatccattatcaaggaagctgaactgcagggagaaagcactaaaaaggataagatctac
caagccaaggagaagtttctggaacttaaagcagagcacgaaaaggtcattataagtaag
gataaaaagatcaatgaagctgagaaacgcacaagggataaggaatcacagatcagcaat
gagcttgccaagagcaaaaaactaaatgatcagctagaagtaaagctaaaggaagtagac
cataaaagtgaattcttggagaaaaagcaatccgaattggaaaagcttcacaaaagccaa
gttcagcagttagaggttatttcaggattatctgccgaggatgccaaaagccaattgatg
gagtcattgaaggaaaatgcaaaatctgatgccatggcatttattcaatccacggtggaa
gaggctaaattaacggcacaacaagaggctaagaaaattgtcatcaataccatccaacgt
attggaaccgaagaagcggtagaaaattgtgtttccgtattcaacttggaatcagacgac
gtaaagggccgtatcattggtcgcgaaggaagaaatatccgagccctagaagccgcaaca
ggggttgaaattattgttgatgataccccagaagctattattctttcttgttttgattct
gtaagaagggaagtagcgcgtttatcacttcataaattggtcaccgatggtcgtattcac
ccagcacgaattgaagagatcgtcaagaaaacggaaaagcagattgaagaagaaattgta
gagataggaaaacgtaccgtaatcgatttgggcatccatgggttgcacccagagcttatc
aaagctgttggtagaatgaaataccgttcttcttatggacaaaacttattacaacactct
agggaagttgccaaactctgtggtgttatggccgctgaattgggacttaaccctaaattg
gcaaaacgtgcaggactattgcacgatataggtaaggtgccaaacactgaagcagaggtt
gaaacgccacatgccatcttaggaatgcaatgggcagagaaatacggagagaaaccggat
gtttgcaatgcgattggtgcccaccatgatgaaattgaaatgaaaaccttgatctcacca
attgttcaggtgtgtgatgctattagtggtgccagaccaggggctcgtagacaagtattg
gattcatatatccaacgtcttaaagatttggaggatatcgcctttggttttggtggtgtt
caaaaggcttatgctattcaagccggaagagaattgcgcgtgatcgtggaaagtgaaaaa
gtgagtgatgagaaggcagcggagctatcttttgaaatatcacaaaaaattcaaacggat
atgacctatccaggtcaggttaaagtgaccgttattagggagacacgtagtgtgaatgtc
gcaaaataa
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