KEGG   Sediminicola sp. YIK13: SB49_06750
Entry
SB49_06750        CDS       T04145                                 
Name
(GenBank) ribonuclease
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
syi  Sediminicola sp. YIK13
Pathway
syi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:syi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SB49_06750
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:syi03019]
    SB49_06750
Messenger RNA biogenesis [BR:syi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SB49_06750
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KhpA-B_KH KH_2 HH_signal FeoB_associated
Other DBs
NCBI-ProteinID: ALM07534
UniProt: A0A0S1SAZ6
LinkDB
Position
complement(1530224..1531792)
AA seq 522 aa
MDSTTIIIVGIVGLAIGFAIAKIMEKGKASKTIDSAKKEAASIIKEAELQGESTKKDKIY
QAKEKFLELKAEHEKVIISKDKKINEAEKRTRDKESQISNELAKSKKLNDQLEVKLKEVD
HKSEFLEKKQSELEKLHKSQVQQLEVISGLSAEDAKSQLMESLKENAKSDAMAFIQSTVE
EAKLTAQQEAKKIVINTIQRIGTEEAVENCVSVFNLESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEIVKKTEKQIEEEIV
EIGKRTVIDLGIHGLHPELIKAVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPKL
AKRAGLLHDIGKVPNTEAEVETPHAILGMQWAEKYGEKPDVCNAIGAHHDEIEMKTLISP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFGGVQKAYAIQAGRELRVIVESEK
VSDEKAAELSFEISQKIQTDMTYPGQVKVTVIRETRSVNVAK
NT seq 1569 nt   +upstreamnt  +downstreamnt
atggacagtactacaataataatagtaggtatagttggtctggcgattggttttgccatt
gccaagattatggaaaagggaaaggcttccaaaaccatagacagtgcaaaaaaagaagcg
gcatccattatcaaggaagctgaactgcagggagaaagcactaaaaaggataagatctac
caagccaaggagaagtttctggaacttaaagcagagcacgaaaaggtcattataagtaag
gataaaaagatcaatgaagctgagaaacgcacaagggataaggaatcacagatcagcaat
gagcttgccaagagcaaaaaactaaatgatcagctagaagtaaagctaaaggaagtagac
cataaaagtgaattcttggagaaaaagcaatccgaattggaaaagcttcacaaaagccaa
gttcagcagttagaggttatttcaggattatctgccgaggatgccaaaagccaattgatg
gagtcattgaaggaaaatgcaaaatctgatgccatggcatttattcaatccacggtggaa
gaggctaaattaacggcacaacaagaggctaagaaaattgtcatcaataccatccaacgt
attggaaccgaagaagcggtagaaaattgtgtttccgtattcaacttggaatcagacgac
gtaaagggccgtatcattggtcgcgaaggaagaaatatccgagccctagaagccgcaaca
ggggttgaaattattgttgatgataccccagaagctattattctttcttgttttgattct
gtaagaagggaagtagcgcgtttatcacttcataaattggtcaccgatggtcgtattcac
ccagcacgaattgaagagatcgtcaagaaaacggaaaagcagattgaagaagaaattgta
gagataggaaaacgtaccgtaatcgatttgggcatccatgggttgcacccagagcttatc
aaagctgttggtagaatgaaataccgttcttcttatggacaaaacttattacaacactct
agggaagttgccaaactctgtggtgttatggccgctgaattgggacttaaccctaaattg
gcaaaacgtgcaggactattgcacgatataggtaaggtgccaaacactgaagcagaggtt
gaaacgccacatgccatcttaggaatgcaatgggcagagaaatacggagagaaaccggat
gtttgcaatgcgattggtgcccaccatgatgaaattgaaatgaaaaccttgatctcacca
attgttcaggtgtgtgatgctattagtggtgccagaccaggggctcgtagacaagtattg
gattcatatatccaacgtcttaaagatttggaggatatcgcctttggttttggtggtgtt
caaaaggcttatgctattcaagccggaagagaattgcgcgtgatcgtggaaagtgaaaaa
gtgagtgatgagaaggcagcggagctatcttttgaaatatcacaaaaaattcaaacggat
atgacctatccaggtcaggttaaagtgaccgttattagggagacacgtagtgtgaatgtc
gcaaaataa

DBGET integrated database retrieval system