Thalassomonas actiniarum: SG35_012090
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Entry
SG35_012090 CDS
T08826
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tact
Thalassomonas actiniarum
Pathway
tact03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SG35_012090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tact03400
]
SG35_012090 (mfd)
Enzymes [BR:
tact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SG35_012090 (mfd)
DNA repair and recombination proteins [BR:
tact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SG35_012090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
AAA_PrkA
Motif
Other DBs
NCBI-ProteinID:
WDE01306
LinkDB
All DBs
Position
complement(2776021..2779536)
Genome browser
AA seq
1171 aa
AA seq
DB search
MSQTSNIFDPVIAKRRGDLADKKVWSNLVGSSSALAIYHGAKNAGSPVLLITYDTPSALR
LEQELLSLNTDNGLSVCLFPDWETLPYDSFSPHQDIISQRLSTLYQLSRIEQGIVIVPVT
TLMQRLAPKQYLDANSLVIKKGDKKDLHQLRQELEASGYRHVDQVMEHGEFSARGAILDL
FPMGSTSPFRLDFFDDEIDEIRLFDPDSQRSSDKIDNINLLPAHEFPTDQDGISLFRSQY
RELFSGTIDKESVYHKVSGGILPAGIEYYLPLFFQQTNTLCDYLSAQTLVMLYGDIDQAL
NHHWNDIKHRYEERRYDRSRPLVPPEQLFLGSDELYRALKPFDRIKLDAAGGQTQASEAK
AGTVSFDVKALPDLSVNHKLKQPFELLDRFIAAKDTPDKILFVAESQGRRESVLELLIRD
NIKPQLVDSIDDFINSDIQLGITVNALTTGFIFQSDEKSQHGPEAIALITEAELLGDRVR
QTRRRNKQQDVQADALFKNLAELSIGQAVVHFEHGIGRYMGLQTLETGGITTEFLMLSYA
NDAKLYVPVASLHLISRYSGAEGDRAPLHKLGTDAWSKAKKKAAEKVRDVAAELLDIYAK
RASNQGYKFNRDKKDYQAFSDSFGFEETLDQEQAINAVISDMLQAKAMDRLVCGDVGFGK
TEVAMRAAFVAVNDSKQVAILVPTTLLAQQHYENFRDRFANWPVTIEVLSRFKSAKEQNE
VISRVESGQVDILIGTHKLLQNSITYKDLGLLIVDEEHRFGVKQKEKIKQLRSNVDILTL
TATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRQRDDALIRESVLREILRGGQVYF
LHNNVDTIEKTAADLQTLLPEAKIVIAHGQMRERELERIMSDFYHQRYNVLVCTTIIETG
IDIPSANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLEAIA
SLEDLGAGFTLATHDLEIRGAGELLGEDQSGQMSQIGFSLYMEMLDLAVDALKEGKEPTL
NQVTSSQTEIDLRLPALLPDDYIFDVSIRLSLYKRIASCKNKNQLDEIQVELIDRFGLLP
QATKNLVQIAKLRLKAQKIGIARLEAGPAGGAIEFTDNTKVDPMFIIGLIQQQPAIYKME
GANKLKFKHPSEDAKSRFDLVTNMINDLAKH
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaacaagcaatattttcgatccggttatcgccaaacgccgcggtgatcttgcc
gataaaaaagtatggagcaacttagtcggtagcagcagcgcgctggccatttatcatggt
gcgaaaaatgcggggtcgccggtattgctgatcacttatgatacgccatcggcattacgc
ctggagcaggaattactgagcttaaacacggataacggcttatccgtgtgtttattcccc
gactgggaaaccttgccctatgacagcttttctccgcaccaggatattatttcccagcgc
ctgtctaccctctatcaactgtcccggattgaacaaggcatagtaatagtgccggttacc
acgttaatgcagcgactggcgccaaaacaatacctggatgccaatagcctggtcattaaa
aaaggcgataaaaaagatctgcaccagctcagacaagagcttgaggccagcggctaccgc
catgtcgatcaagtgatggaacacggcgaattttccgcccgcggcgccatcctggattta
tttcccatgggcagcaccagcccgttccgcctggacttttttgacgatgaaatagatgag
atccgtttatttgatcccgacagccagcgctccagcgataaaattgacaacatcaactta
ttgcccgcccatgaatttcccaccgatcaggatggcatcagtttatttcgcagccagtac
cgggagctttttagcggcaccatagacaaagagtccgtctaccataaagtcagcggcggc
attttacctgccggcatagaatattatctgccgttgttttttcagcaaaccaataccctg
tgcgactatttatccgcacaaaccttagtgatgctttacggcgatatcgaccaggcgttg
aaccaccactggaatgatatcaagcatcgctatgaagaaagacgttacgacagatcccgc
ccgctggtgccgcccgagcagttgttccttggcagcgatgagctttaccgcgcgttaaaa
ccttttgatcgcatcaaactcgatgccgccggcggacaaacacaggccagtgaagcaaaa
gccggtaccgtcagctttgatgtcaaagccttgccggatttaagcgtgaaccataagcta
aaacagccatttgagttattggatcggtttatcgccgccaaggataccccggataaaatt
ctctttgtcgccgaaagccagggacgccgggaaagtgtactggaattactgatccgggat
aatatcaagcctcagctggtggacagcatagatgatttcattaacagcgatatccagctg
ggcatcacggttaatgcgttaacgaccggctttatttttcaaagcgacgaaaaaagccaa
cacggcccagaggcaattgccctgatcaccgaagcggaattactcggcgaccgggtcagg
cagacccgtcgccgcaacaaacaacaggatgtccaggcagatgccttgtttaaaaacctg
gcagagctttccatcggtcaggcagtcgtgcattttgaacacggcatcggccgctatatg
ggcttacaaacactggaaaccggcggcatcactacagagtttttgatgctcagttatgcc
aacgacgccaaattatatgtcccggtcgcctcattgcacctcatcagccgctactccggc
gccgaaggcgaccgcgcaccgctgcataaattaggcacagacgcctggagcaaagccaag
aaaaaagccgcagagaaagtgcgcgatgttgcggcagaattgctggatatttacgccaag
cgcgccagcaaccagggctataaatttaatcgcgataaaaaggactaccaggcctttagc
gacagtttcggctttgaagaaaccttagatcaggagcaggctattaacgccgtgatcagc
gatatgctccaagccaaggccatggaccgcctggtgtgcggcgatgtcggttttggtaaa
accgaagtggcgatgcgtgccgcctttgttgccgtcaatgattctaagcaggtcgccatt
ttggtgccgaccaccttgctggcccagcagcattacgaaaatttccgtgatcgttttgcc
aactggccggtcaccatagaagtcttgtcccgttttaaatccgccaaagaacaaaacgag
gtgatctcccgggtcgaatccggccaggtggatatcttgatcggcacccataaattgctg
caaaactccatcacctataaagacttaggtttacttatcgtcgatgaagagcacaggttc
ggggtcaagcaaaaagagaaaatcaaacagctgcgcagcaatgtcgatatcctgaccctg
accgccaccccgatccccagaaccttaaatatggccatgggcggcatgcgggacttatcc
attatcgccacgccgccggcaaaacgcctggcggtgaaaacctttgtccgtcagcgcgat
gatgccctgatacgcgaatctgtgctcagggaaatcctgcgcggcggccaggtgtatttc
ctgcacaataatgtcgataccatagaaaaaaccgccgcagatctgcaaaccctgctgccg
gaggcaaaaattgttatcgcccacggacaaatgcgcgagcgcgaacttgagcgcatcatg
agcgatttttaccaccaaagatataatgtgctggtgtgtaccaccattatcgaaaccggt
atcgatattcccagcgccaataccatcatcatggatcgggcagatcacttaggcttggcg
caactgcatcaactcaggggccgggttggccgctcccaccaccaggcctatgcctattta
ttaaccccgcatgaaaagcgcatgaccaaggacgcgaaaaagcgtctcgaggccatcgcc
tcactcgaagatcttggtgcaggttttaccctggctacccatgacctggagatccgcggc
gccggtgaattactcggggaagatcaaagcggccagatgagccagataggtttcagcctc
tatatggaaatgctggatctggcggtggatgccttaaaagaaggcaaagagccgacctta
aaccaggtcacctcctcgcaaacggaaatcgatttacgcctgccggccctgctgccggat
gattatatttttgatgtcagcatccgcttaagcctttataagcgcattgccagctgtaag
aataaaaaccaactcgatgaaatccaggtggagctgatcgaccgtttcggcttattgccc
caggccactaaaaacctggtacaaatagcaaaattgcgtttaaaggcacaaaaaatcggt
atcgcccggcttgaagccggtccggcgggaggcgctatcgaatttaccgataataccaaa
gtcgatcctatgtttattatcggtttgatccagcaacagccggcgatttataaaatggaa
ggggccaataaactcaaatttaaacacccgagtgaagacgccaaatctcgttttgatctg
gtcaccaatatgataaatgacctggccaaacactaa
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