Tamlana carrageenivorans: C1A40_06610
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Entry
C1A40_06610 CDS
T05295
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
taj
Tamlana carrageenivorans
Pathway
taj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1A40_06610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taj03019
]
C1A40_06610 (rnr)
03016 Transfer RNA biogenesis [BR:
taj03016
]
C1A40_06610 (rnr)
Enzymes [BR:
taj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C1A40_06610 (rnr)
Messenger RNA biogenesis [BR:
taj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1A40_06610 (rnr)
Transfer RNA biogenesis [BR:
taj03016
]
Prokaryotic type
tRNA degradation factors
C1A40_06610 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
CSD
Rep3_N
FSIP1
E2F_TDP
Motif
Other DBs
NCBI-ProteinID:
AUS05159
UniProt:
A0A2I7SGY2
LinkDB
All DBs
Position
complement(1478293..1480491)
Genome browser
AA seq
732 aa
AA seq
DB search
MTRKRKGKSKNKGISNLSNTILSILKKERNQTFNYKQIAAKLGVNDASSRNQIIKKLRDL
QGKQEIEEVDRGKFKAIINAEYHTGILDLASKGNGYVICEDFEDDVFIASNNINKALHND
EVEFYVYKRRKHGKLEGEITNIIKRAKSEYVGVIQLHDNYAFVVADSNKMYKDIFVPINK
TFKAEDGDKVLVKLEDWPEKADSPNGKVVQVLGKPGDHNTEIHAILAEYGLPHEFPYEVE
QFANQLDTSITAEEIAKRRDMRKDLTFTIDPKDAKDFDDALSFEVLDNGLYEIGIHIADV
SHYLEEGTVLDDEAYERATSVYLVDRVVPMLPEVLSNKACSLRPHEEKYTFSAVFQMNDK
AEIKNQWFGRTVTYSDARFAYEEAQAIIESKSNTIPAEVSLTGKTYDTDQKIADAILKMD
ALAKIMRGKRMRSGALSFDKVEVKFNLDEEANPIGVFFKTSQDANKLIEEFMLLANRKVS
EFIGKQDPKKTFVYRVHDEPDDSKLANLQGIVSKFGYKLNFKDRKTTAASLNHLLTEVHG
KKEQNLVDTLTIRSMSKAEYTTHNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDG
GKSANEDVYEEKCQHSSNMENLATKAERDSIKYMQIKFMQDHKDEAFVGVISGVTDWGIY
VEIISNKCEGMVSVRDMTDDHYAFDQDQYAMVGRNSGVTYQLGDEVVVKVKNTDLVKKHL
DFNLLGKPETAI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgactagaaaaagaaaaggaaaatccaaaaataaaggcatttccaacctatcaaatacc
atattaagtattttaaaaaaagaacgtaaccaaacgtttaactacaaacaaatagcagcc
aaacttggtgtaaacgatgcgagtagtcgtaatcaaatcataaaaaaattacgggattta
caaggcaaacaagagattgaagaagtagatcgcggtaagtttaaggccattattaatgcc
gaataccataccggcattcttgatttggcctctaaaggtaacggctatgttatttgcgag
gattttgaagatgatgtatttattgcttctaataatattaacaaagctctacataacgac
gaagttgaattttacgtctataaacgtagaaagcacggcaagcttgaaggcgaaattacc
aatattataaaacgtgctaaatcggagtatgttggtgtgattcaactgcatgataattat
gcctttgttgtagccgatagcaataaaatgtacaaagatatttttgtacctatcaataaa
acctttaaagctgaagatggcgataaagttttagtcaaactagaagattggccagaaaaa
gccgattctcctaacggaaaagtggttcaagttttaggaaaaccaggcgatcataacacc
gaaatacatgcgattttggcagagtatggtttacctcacgaatttccttatgaagtggaa
cagtttgccaatcagttagatacttccattacagctgaagaaatagctaaacgtcgcgac
atgcgtaaagatttaacctttaccatagacccgaaagatgctaaagattttgatgatgct
ttatcttttgaagtgttagacaatggtttatacgaaataggaattcatattgccgatgtg
tcgcattatttagaagaaggcactgttctagatgacgaagcttacgagcgcgctacctct
gtttatttagtggatcgtgtggtgcctatgttacctgaagtcctttctaataaagcttgt
tctttacgtccgcatgaagaaaaatacactttttctgcagtgtttcaaatgaatgataaa
gccgagattaaaaaccaatggtttggaagaacggtaacctatagtgatgcccgttttgct
tatgaagaggcccaagcgattatagaatctaaatcgaataccattcctgctgaagtatct
ttaacaggaaaaacctatgacaccgatcaaaaaatcgccgatgccattttaaaaatggat
gcactggctaaaattatgcgtggtaagcgtatgcgttctggtgccctttcttttgataag
gttgaagtaaaattcaatttggatgaagaggcaaatcctattggtgtattttttaaaacc
agccaagatgctaataaacttattgaagagtttatgcttttagcgaatcgaaaagtatca
gaatttatagggaaacaagatcctaaaaaaacctttgtatatcgtgttcatgacgaacca
gacgatagtaaattagctaatttacaaggtattgtatctaaatttggttacaaacttaat
tttaaagaccgtaaaactacagcagcttccttaaaccatttattaacagaagtgcatggc
aaaaaggagcaaaatttagtagataccctcacgataagaagtatgagtaaagccgaatat
acaacacataatattgggcattacggattggctttcgactattacagccattttacttca
cctattcgtcgttaccccgatgtaatggcgcatcgtttattgcaacattatttagatggc
ggaaaatcggctaacgaagatgtgtacgaagaaaaatgtcagcattccagtaatatggaa
aacctggctactaaagccgaacgtgattctataaaatacatgcaaattaaattcatgcaa
gatcataaagatgaggctttcgtgggtgttatttctggagttaccgattggggcatatac
gtcgaaattatctcaaataaatgtgaaggaatggtgagtgttcgcgatatgaccgacgat
cactacgccttcgatcaagatcaatatgctatggttggtcgaaattcgggcgttacctat
caactaggtgatgaagtggttgttaaagttaagaacaccgatttagttaaaaaacattta
gattttaacttattagggaaacctgaaaccgcgatttaa
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