Tribolium castaneum (red flour beetle): 656558
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Entry
656558 CDS
T01046
Name
(RefSeq) collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tca
Tribolium castaneum (red flour beetle)
Pathway
tca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
656558
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tca00536
]
656558
Glycosaminoglycan binding proteins [BR:
tca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
656558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
656558
NCBI-ProteinID:
XP_008199891
LinkDB
All DBs
Position
LG10:6008356..6020648
Genome browser
AA seq
1627 aa
AA seq
DB search
MPGIFTPFLLWILSTVLALQNEVDLIERANIWNEPNGLMRILGRCLNNSENKDILRTDWA
YRFDENQVVLSTLDLFPQGFPRDFSILTAVRLTPGDIYPLVTVYSESGEEQISVSLGNEI
IFTYESTNVTFNVSLDDGEWHRLAFSIKGDSINMIYECNNTITQALNRSTNDLMTDGITL
IGYQLTDEKFLKGDIQLLTVVPTPDAAYELCNFYAQDCDTVVSLREANFYAKLTNQNSLS
WVVGNNASRGDLDYDEEFVTVLPTVDFVTTGRGFPGLRGFPGPSGPPGLPGAKGDSGRNG
LDGVRGPVGPPGHVFMIPLNLQSNEKGPDSQSENFRQLLSQHMMSMRGIEGPMGLTGVPG
PQGPPGPEGLKGEPGDLGEPGPMGEKGLPGNPGREGRRGRPGRDGERGITGPPGPKGEQG
LLGLPGLPGDKGERGLPGLVGEPGLRGHDGMQGEEGPPGLSGMPGEMGPRGFTGPRGLPG
VPGPPGIPGNEGSAGSKGQAGPPGSPGAPGLVGPPGAVGPPGPHGLLGPPGVMGPHGKPG
IPGLPGADGAPGSPGSPGAMGPKGEQGLAGPAGPVGFPGPRGVKGDEGKRGILGEKGDKG
DRGLEGEKGDLGMKGSVGLVGLPGIPGLEGPEGPKGFDGPRGETGNVGLPGEKGKDGPPG
LPGYPGNLGEKGDKGSSGKIGDNGEKGDRGNPGTPGERGEPGPRGFRGSRGRRGRAGQQG
PKGDTGQPGPPGPQGERGIPGPEGPRGFAGAPGPPGINGKDGHPGSPGERGPPGEPGKPG
MVGPPGVIGPPGPTGEVGPIGEHGPPGLPGVPGEAGLPGEAGKEGAPGSPGPEGKPGPEG
PTGLPGFPGERGLTGLPGIPGLKGDTGPPGAPGVTGDKGQQGEPGKDGPQGPEGRKGPPG
TAGSPGAKGERGEAGPPGPSGRDGLPGLRGLPGGPGPVGPPGEDGDKGDVGPPGEKGFKG
SQGETGPSGSTGPPGSRGEPGPVGPPGDKGPPGEMGRQGSKGEDGPVGLPGPSGPGGLQG
LPGPQGPKGEIGDMGQKGPTGAAGIPGEPGPRGTKGADGLPGLPGPEGPPGIKGDSGTPG
LPGPPGIDGKPGERGPQGQKGEDGKTGLQGPPGPRGPPGTEGPKGSPGPEGFPGPPGESG
LQGAKGEPGKDGEDGRQGETGPPGPPGPVGPMGTPGLPGKTGLDGPAGLQGPSGPPGEKG
DIGEIGPPGPQGMTGPQGLPGPQGPPGLTGAPGVAGENGAPGSPGLTGSPGKTGSPGPAG
QKGDRGRRGPKGHRGEMGLSGIKGDLGEKGNKGDKGPPGPEGRKGETGPEGPIGIKGSDG
PAGPPGMEGPPGPKGVEGQTGPKGEPGPPGPAGPPGPPAEMPLLPPEMLFERTFSRERRN
VEEIISEYEDMNTEAETDDNGKFLEMYNTIYSMRQDLERVKKPIGTRENPVRSCKDLFYG
HPQFPDGWYWIDPNSGMTDDAIYVYCNMTAEGETCVFPDAHSANMPNIPWRQEGGKKDWY
SHLRGGFKITYETVGVVQMTFLRLLYQEAYQNFTFSCINTIAWFNENTQDHKMALKFRGD
NEYEFAHKKTGLKVIQDGCQDGTTKSETIFELRTTKLDRLPIVDFFPLDYGAPNQAFGFT
VGPICLK
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgcccggaattttcacaccattcctcctatggatcctctccaccgtcttagcgctacaa
aacgaagtggatctaatcgagagagctaacatttggaacgaaccaaacggacttatgcgc
attttaggccgatgtttgaacaattccgaaaataaagacattctacgaacggattgggct
tacagatttgacgaaaatcaagtggtcttaagcacacttgatttatttccgcaggggttt
ccccgggatttttccattttgacagctgtcagactcacacctggcgacatctatccgcta
gtcactgtatacagtgaaagcggggaagaacagatttctgtttcactaggaaatgaaatt
attttcacctacgaaagcactaatgtgacctttaacgtatcactagatgatggagaatgg
caccgactagcttttagcatcaaaggcgactcgattaatatgatatatgagtgcaataac
accataacccaggctctaaaccgctcaaccaatgatttaatgacagatggcatcactctg
attggttaccaactgacagacgagaaattcctcaagggtgatattcaactcctgacagtg
gtaccaaccccagacgccgcctacgaattgtgcaacttttatgcacaagattgtgacacg
gttgtaagtcttcgagaggccaatttttacgccaagttaacaaaccaaaattccctaagt
tgggttgttggcaacaatgcaagtcgtggcgatcttgattacgacgaggaatttgttaca
gtgttgccaaccgttgattttgtgacaaccgggcgcggttttccgggtctgaggggtttt
ccgggaccttcgggaccccccggacttccgggtgccaaaggtgactccggaaggaacggt
ttggacggggtgaggggtccggttggcccccctgggcatgtctttatgattccgttaaat
ttgcaaagtaatgaaaaagggccggactcccagtctgagaacttccgccagttgttgtcg
caacatatgatgtcgatgcgtgggattgaaggtccgatgggattaacgggagttcccggt
cctcaaggtcccccaggtcccgagggattaaagggggaacctggggatctgggtgaaccg
ggacctatgggtgaaaaaggccttccgggaaatcccggacgtgaagggagacgtggaaga
ccaggccgtgatggggaacgtgggattacaggccctccgggtcctaaaggggaacaggga
ttattgggattaccgggacttccgggtgataaaggggagagggggctcccgggtttggtc
ggcgaaccgggattacgtggtcacgacgggatgcaaggcgaggaaggtcctccgggactt
tcgggaatgcctggagaaatgggccctcgggggttcaccgggcctaggggattacccgga
gtgccaggcccgcccggaattccgggtaatgaaggatcggcgggttccaaaggccaggcg
ggacctcccggatcacctggagcaccgggattagttggaccccctggagcggtgggtcct
ccaggtcctcacgggttacttggaccaccgggagttatgggaccgcatgggaaacccggg
attccgggattaccgggtgcagatggcgcacccggaagtcccgggagtcccggagcaatg
ggtcctaaaggagagcaaggtttggcgggaccggcgggtcctgtgggttttccgggacca
cgtggtgttaagggggatgaagggaaaagggggattctgggtgaaaaaggggataagggt
gataggggtttggagggggaaaaaggggatttggggatgaagggaagtgtgggtctggtg
ggattacccggaattcccggtttggaaggtcccgaaggacctaagggatttgatggtccg
agaggagaaaccggaaatgttggcttacctggggagaaaggaaaagacggacctccgggt
cttcccggatatcccggaaatctgggtgaaaaaggggataaagggtcgagtggcaaaatt
ggggataatggagagaaaggagatagaggaaatccgggaactccaggtgaacgtggcgaa
ccaggacctcgtggattccggggttcgcgtggtcgccgtggccgtgcaggtcaacaaggt
cccaagggagacaccggccaacctggaccacctggacctcaaggcgaacgaggcatcccg
ggtcctgaaggacctcggggttttgccggagcaccgggtcctcctggaatcaatggaaaa
gacggccatccgggatcacccggagaacgtggacctcccggtgaaccaggaaaacccggc
atggtgggtcctcctggagtaatcggaccaccgggtcctacgggtgaagttggtccaatt
ggggaacatggacctcccggacttccgggggttccgggtgaggctggtctgcctggagaa
gcagggaaagagggagctccaggaagtcctggaccggaggggaaaccaggtcctgaaggc
ccaactggattacctggttttccgggtgaacggggattgacgggattaccgggaattccg
ggtcttaaaggcgatacgggaccgcctggagctccgggagttacgggagataaggggcag
cagggagaaccggggaaggatggaccacaaggtcccgaaggtcggaaaggtcctccagga
acagcgggatcccccggtgctaaaggggaacgtggcgaggctggacctcccggtccgtca
ggacgtgatggtttaccgggactcagagggttacctggaggtccaggtcctgtaggaccc
ccgggtgaagatggcgataagggcgatgttggtccacctggggaaaagggatttaaagga
agtcaaggagaaacggggccgtctggaagtaccggtcctcctggatcaagaggggaacca
ggtcccgtcggacccccaggtgataaaggaccaccaggtgaaatgggacgtcaagggtca
aagggtgaggatggtcccgtgggactcccgggaccttccggacctggaggattacaaggg
ttacccggacctcaaggtcctaaaggagaaataggagatatgggtcagaaaggtcccaca
ggagcagcaggaataccgggagaaccgggtcctagaggaacgaaaggagccgatggttta
cccggattgcctggacccgaaggtcctccgggaattaaaggcgattcgggaactcctgga
ctaccaggacctccagggattgatggaaaaccgggagaaaggggaccacaaggacaaaaa
ggcgaagacggaaaaacggggcttcaagggcctcctggcccgagaggtcccccgggaaca
gaaggtccaaaaggatcaccaggacctgaaggttttcccggccccccgggcgaatcaggc
cttcaaggagctaaaggcgaacctggaaaagacggtgaagacggtcgtcaaggtgaaact
ggacccccaggacccccaggtcctgtaggtcccatgggaacaccgggacttccgggaaaa
acgggacttgacggtcctgcaggacttcaaggaccttcgggacccccgggtgaaaaaggc
gacatcggcgaaatcggccctccaggtcctcaaggaatgacaggacctcaaggcctacct
ggccctcaaggacctcccggattaacaggagctccaggcgttgctggggaaaatggagct
ccaggttctccaggcttaacaggatcacctggaaaaaccggaagtccgggtcctgcagga
cagaagggagaccggggaaggagaggtccgaaaggacaccgaggcgaaatgggattatcg
ggaattaaaggggatttgggcgagaaggggaataaaggggataagggacctccaggtcct
gaaggacgtaaaggagagacaggacctgaaggtcccatcggaattaaaggaagtgatggt
cctgcgggacctccaggaatggaaggaccaccgggacctaaaggagtggaaggtcagacg
ggaccaaagggcgaacctggacccccaggtcctgcaggaccacctggacctccggcggaa
atgccgctacttccaccggaaatgctcttcgaacgaacttttagtcgggaaaggcgcaat
gttgaggaaattatttccgaatatgaagatatgaacacggaagcggaaacagacgataat
ggaaaattcctggaaatgtacaacacaatatattccatgagacaggacttagaaagggtg
aaaaagcctatagggacccgagaaaacccagtccggtcctgcaaagacttgttttacggc
caccctcaattccctgatggatggtactggattgaccccaactcgggtatgaccgacgac
gccatctatgtttattgcaacatgacagctgagggcgaaacgtgcgtttttccggacgcc
cacagcgccaacatgcccaacataccctggagacaagaagggggcaaaaaagattggtac
tcccacctacgcggcggctttaaaataacttatgaaacagtaggcgtcgtccaaatgaca
ttcctccgccttctgtaccaagaagcctaccaaaatttcaccttttcttgcataaacacc
atcgcatggtttaacgaaaacacgcaagaccacaaaatggctcttaaattccgcggcgac
aacgagtacgaatttgcgcacaagaaaaccggtctgaaagttatccaagatggttgccaa
gatggcaccaccaaaagtgagacaattttcgagttacggaccacaaaattggaccgtttg
cccatcgttgacttttttccgcttgactatggcgcccccaaccaagcgtttgggttcaca
gtgggccccatttgcctcaagtag
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