Theobroma cacao (cacao): 18590160
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Entry
18590160 CDS
T02994
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03022
Basal transcription factors
tcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18590160
09124 Replication and repair
03420 Nucleotide excision repair
18590160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcc03021
]
18590160
03400 DNA repair and recombination proteins [BR:
tcc03400
]
18590160
Transcription machinery [BR:
tcc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18590160
DNA repair and recombination proteins [BR:
tcc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18590160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
Plant_vir_prot
Motif
Other DBs
NCBI-GeneID:
18590160
NCBI-ProteinID:
XP_017982917
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All DBs
Position
9:32605877..32613603
Genome browser
AA seq
597 aa
AA seq
DB search
MASGHVTKRAKYKTTIKDPGTPGTLRMTLEKILFVPHNPKSAGKLDVEFRFIKGQKHTKE
GSSKPPWLNLTNNQNGSFIFEFENYSDLQDCRDFVGKVLAKSGEVSEKPTVTYPDEQLSA
AEMELRIKLLREDSELQKLHKQFVLSGVLTEAEFWATRKKLLDREANKKTKQRLGFKSAM
ISDIKPSTDGRTNKVTFNLTPEIILQIFAEKPAVHRAFLTYVPNKMSERDFWTKYFRAEY
LHSTKNSVAAAAEAAEDEELAVFLKQDDILASESRSKIRRVDPTLDMDADEGDDYTHLPD
HGIFRDGSKEVTESENELYRRTLSQDINRHAAVVLEGRAVDVELEDTRSVAEALARSKQE
SSTKGESYGDTSRERLDRVSRMTEIEDLQAPNNLPLAPLCIKDPRDYFDSQQVNALRTSG
DELAGTEQIKCSLSSQEVYGSLRESISVIKAMGLKDPIVKPEVAHQVFDALTQSISTTKY
NIGKNPQESVLDRLPKKIKEELLHHWTSILELLRHFWASYPITTSYLYTKVNRLKDAMSH
IYPQLEEIKGSVPSDLRHQVSLLIRPMHQALDAAIQHYEADMQKRSARSGERPNGYA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtggtcacgtgactaagcgagctaagtataaaaccacaatcaaggaccctgga
actcccggtactcttagaatgacacttgagaaaatcttatttgtgcctcataatcctaag
tcagctggaaagcttgatgtcgagtttcgattcattaaaggtcaaaagcatacgaaggag
ggatcaagtaagccgccatggcttaatcttacaaacaatcagaatgggagtttcatcttt
gagtttgaaaattattctgatctccaagattgtcgagattttgtaggcaaagttcttgca
aagagtggagaagtttctgaaaaacctactgtcacatatcctgatgaacaactcagtgca
gctgaaatggagcttcgcattaagctattacgggaagatagtgaattgcagaaacttcac
aagcaatttgtgcttagcggtgtcctgacagaagctgaattttgggcaacacggaagaag
ttgctggatagagaggccaacaaaaagacaaagcagaggctgggtttcaaaagtgcaatg
atttctgacattaaaccatcaactgatggtcggacgaacaaagtcacatttaatttgacc
ccagagatcattcttcaaatttttgctgagaagccagctgttcaccgtgcattcctaact
tatgttcctaacaagatgtcagaacgggatttctggaccaaatattttagagcagaatac
ctacatagtacgaaaaatagtgttgctgctgcagcagaggctgctgaagatgaggaactt
gctgtttttctcaagcaggatgacatattggcaagcgagtctcggtcgaagatcaggcgg
gttgacccaacgctggacatggatgctgatgagggggatgattatacacatcttcccgat
catggaatctttcgtgatggtagtaaggaagtaactgaatcagaaaatgagctatacaga
agaactctatcccaagatattaaccggcatgctgcagttgttcttgagggaagagcagtt
gatgtggagttggaagacacgaggtctgtagcagaagctcttgctcggtcaaaacaagaa
tcatcaactaagggagaatcatatggggatacaagccgggagaggttagatagggtatca
aggatgactgaaatagaagatcttcaggcacctaataatcttccactggcaccactttgc
attaaggatcctcgagactattttgactctcaacaagttaatgcacttagaacttctgga
gatgaacttgctggaactgaacaaataaaatgcagtttgagcagccaggaggtgtatggt
tctttgagagagtccatctctgtgatcaaagctatggggttgaaggatccaatagtcaag
cctgaagttgctcatcaagtttttgatgctttgacccagagtatctcaactaccaaatat
aatatcgggaaaaatcctcaagagagtgttctggacagattgccaaagaaaattaaagag
gaactattgcatcactggacatcaatccttgaactgctcagacatttttgggcatcatat
cctatcaccaccagttacctctataccaaggtaaacagactgaaggatgccatgtcacat
atctatccacagctagaggagattaagggatctgtcccgtcagaccttcggcatcaggtt
tccctccttattcgtccaatgcatcaggctctagatgctgcgattcaacattatgaagca
gacatgcagaagagatctgcgcgaagtggagagagaccaaatggatatgcctag
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