Theobroma cacao (cacao): 18612619
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Entry
18612619 CDS
T02994
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tcc
Theobroma cacao (cacao)
Pathway
tcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18612619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcc03019
]
18612619
Enzymes [BR:
tcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
18612619
Messenger RNA biogenesis [BR:
tcc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
18612619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CRS1_YhbY
Miga
NikR_C
Motif
Other DBs
NCBI-GeneID:
18612619
NCBI-ProteinID:
XP_017974234
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All DBs
Position
1:complement(14945498..14949072)
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AA seq
461 aa
AA seq
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MAGRILGSASVALRKPHGLKILSSNSFIFIPNKSFQITSLGDVICKAFGWQQAFVPIYDI
RRFLLEGHVWIHSARFLNASEKVVETLNHSEKDASVDNAGSGDGKVKRKKLKGKRAVVRW
LKYFRWKKKKEYERMTAEEKILYKLRKAQKKEERLGTALKKIEPAESSETTHDPEILTPE
EHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSPEEVKEIAAEL
ARLTGGIVLDIHDDNTIIMYRGKNYSQPPTEIMSPRVTLSRKKALDKSKYRDGLRAVRKY
IPKLEQDLELLHAQAENRPDPMQHVQNTDNDNVDSRNISSLQFEGSNKLKEILDESKELS
ENESTTDSLMASDSEDLSDIFETESDTETERREERPLYLDEFDKFPVESDREPEHSEEHL
CQISMGSKVPTASEKDVDSPNFDEVDRIFIRAASLLKKKRR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaggattttaggttcagcttcagtggctctgcgtaaacctcatgggctcaag
attctttcctctaattcattcattttcatccccaataagtcctttcaaattaccagtttg
ggtgatgttatatgcaaggcttttggttggcagcaagcttttgtcccaatctatgacata
aggaggtttctgctcgaggggcatgtctggattcattcagctcgatttctgaatgcttct
gaaaaagttgttgagacgctcaaccattctgagaaagatgctagtgttgataatgctggt
agtggtgatggtaaggtgaagaggaagaagctgaagggtaaacgagctgtagtacggtgg
ttgaaatacttcaggtggaagaagaagaaagagtatgaaagaatgacagctgaagaaaaa
attctttacaaacttagaaaggctcaaaagaaagaagaaagacttggaacagctttaaag
aagattgaacctgcagaatcatcagaaacaacccatgatccagaaatattgactccggaa
gagcactttttctttttgaagatgggcctcaagtgcaaaaattatgtgccagtaggaaga
cgaggaatttaccagggtgtaattctgaacatgcaccttcactggaagaaacatcagact
ttgaaggtggtggttaagacattttcaccagaggaagtcaaggagattgctgctgagctc
gcacggttgacaggtggaattgtgcttgacattcatgatgataatacaataataatgtac
agagggaagaattattctcaaccaccaacagagattatgtcaccccgggtcactctttcg
agaaagaaggctctggataaatccaaatatagggatgggcttcgagctgttaggaagtat
attcccaagcttgagcaggaccttgagttgcttcatgctcaagctgaaaatagacctgat
ccaatgcaacacgtgcaaaacactgataatgacaatgtggattctaggaacatttcaagc
ttgcagtttgagggttcaaataaattgaaagaaattttggatgagagcaaggaactttct
gaaaatgaatccactacagattcgcttatggcttcagattctgaggatttgtcagatatt
tttgagactgagtctgacactgagacagagaggagggaagagcgaccactttatttggat
gaatttgataaatttccagttgaaagtgatagggaacctgaacattctgaggagcacctg
tgtcaaatatccatgggctcaaaagttcccacagcatcagagaaagatgttgactcacca
aactttgacgaggtcgatcggatatttatacgtgctgcttcacttttaaagaaaaagagg
agatag
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