Tenacibaculum todarodis: LPB136_04555
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Entry
LPB136_04555 CDS
T04588
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ten
Tenacibaculum todarodis
Pathway
ten03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ten00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB136_04555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ten03019
]
LPB136_04555
03009 Ribosome biogenesis [BR:
ten03009
]
LPB136_04555
Enzymes [BR:
ten01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB136_04555
Messenger RNA biogenesis [BR:
ten03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB136_04555
Ribosome biogenesis [BR:
ten03009
]
Prokaryotic type
rRNA helicases
LPB136_04555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
AAA_19
Helicase_RecD
DUF5663
Motif
Other DBs
NCBI-ProteinID:
APG64677
UniProt:
A0A1L3JHT3
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All DBs
Position
996868..998682
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AA seq
604 aa
AA seq
DB search
MTTFLDLGLQEPITRALIDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLP
IIELADQTNSNVQAIILSPTRELAVQIGKNIEDFTKYLPNLKVTTVYGGSNIDEQIRKLK
RGVQIVVGTPGRTVDLINRRALKLGNVKWLVLDEADEMLNMGFKDELDKVLDATPDSKQT
LLFSATFPREVESIARNYMTQPVEITSGEKNTGSDNVSHEYYLVSERTRYQALKRISDLN
PDIYAIIFCRTRRETQEVADKLIQDGYSADSLHGDLSQGQRDSVMEKFRAKTIQILVATD
VAARGIDVNDLTHVINHKLPDQIENYNHRSGRTGRAGSKGISIALVSKKEQGRLRSIERI
IKKKFAHTQVPTGKQICQNQLLHLIDKVQKTEVNEGELNEFLPSIYEKLEGLTREELVQK
FVSLEFNKFLSYYENSKDLNDMSSNRDSSRRGASNENMTRFFINIGRKDKLNPARLIGLI
NDQNIGNKVEIGAIDILDTFSFFELDKNFEAATLDAFQANSPDFEGRGVNIEITKKREGG
GRKRGGGGRRSFGGGDRKSGGGSFGRRRSSEGSSNKRSSRSSDRPDRSTKDKNTGGFGRR
RRER
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatttttagacttaggtttacaagaacctattacaagagctttaattgattta
ggatatgaaaagcctacagtaattcaagaaaaagcaattccacaaattatttcttctgat
acagatttaaaagcatttgctcaaactggtacaggaaaaaccgcagcttttagtttacct
attatagagttagctgatcaaacaaactcaaatgtacaggcaattatattgtctccaact
cgtgagttagcggtacaaattggtaaaaacattgaagattttactaaatatttaccaaac
ttaaaagtaacaacagtttacggtggttctaatatagacgaacaaattagaaaacttaaa
agaggtgttcaaattgtagttggaactcctggtagaacagttgatttaattaacagaaga
gccttaaaattaggtaatgtaaaatggttagttttagatgaagctgatgaaatgcttaac
atgggtttcaaagatgaacttgataaagttttagatgcaactccagacagcaaacaaacc
ttattattttctgcaacttttccaagagaagtagaatctattgcaagaaattatatgaca
cagcctgttgaaataacttcaggtgaaaaaaacacaggttcagataatgtttctcatgaa
tactatttagtttcggagagaacacgctaccaagcattaaaaagaatttctgatttaaat
cctgatatttatgcaattattttctgtagaactcgtagagaaacacaagaagttgcagat
aaattaatacaagacggttatagtgctgactctttacatggagatttatctcaaggacaa
agagactctgtaatggagaaatttcgtgctaaaactatacaaatattagtagcaacagat
gttgcagcacgtggtattgatgttaatgatttaacacacgttatcaaccataaattacca
gaccaaatagaaaactacaatcaccgaagcggacgtacaggacgtgcaggaagtaaaggt
atttctattgctttagttagtaaaaaagaacaaggtagattacgttctattgaacgtata
atcaaaaagaaatttgctcacacacaagttcctactggtaaacaaatttgtcagaatcaa
ttattacacttaattgataaagtacaaaaaactgaagtaaacgaaggtgaacttaatgag
ttcttaccaagtatttatgagaaattagaaggattaactcgtgaagagttagttcagaaa
tttgtctctttagagtttaacaaattcttatcgtactacgaaaactctaaagatttaaat
gacatgtcttctaacagagatagctctagaagaggagcttctaacgaaaacatgacacgt
ttctttattaatattggtagaaaagataaattaaatcctgcaagattaattggtttaatt
aacgaccaaaacattggtaataaagtagaaattggagctattgatattttagatacgttc
tctttctttgaattagataaaaactttgaagctgcaactttagatgctttccaagcaaac
tctccagattttgaaggaagaggtgtaaacattgaaatcactaaaaaacgtgaaggcggt
ggaagaaaacgcggcggcggtggaagaagatcttttggcggcggtgatagaaaaagtggt
ggcggaagttttggaagacgtagaagttctgaaggttctagtaacaaaagatcttctaga
tcttctgatagaccagatagaagtacaaaagataaaaatactggcggtttcggaagaaga
cgtagagaaagataa
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