Tachysurus fulvidraco (yellow catfish): 113639863
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Entry
113639863 CDS
T08119
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tfd00536
]
113639863 (col13a1)
Glycosaminoglycan binding proteins [BR:
tfd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113639863 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113639863
NCBI-ProteinID:
XP_047668434
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Position
4:14108260..14184438
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AA seq
744 aa
AA seq
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MEQDTKVSRDSPGERTCAEHPCKSGAWPRRTEVCGAVAVCVALCLLSLGVSVLFYLRTSE
LQARVNSLEKHREPQQHSAWMFLEQVEPVLLNRLDQMLEEKLASRLPKTRETRDVSHACL
CPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGNTGDKGAPGEPGLSIIGPRGPPGQPGTRG
FPGFPGPIGLDGKPGQNGQKGDMGAPGPKGLPGEQGPKGEKGVCGDYTHRMLPITVRNMP
SISPLILKRLKQGEPGAQGPPGPPGPPGPPGSPGLTGANGPPGKPGEPGKPGKDVRMLTA
MKGEPGVPGQKGDRGDTGLTGPEGPRGFKGDQGQKGEEGKMGLAGEKGEKGERGMPGMPG
KQGVKGELGFPGAPGLKGQTGIPGIPGKRGYKGEKGEMSSTGVGVKGEPGVPGLPGHKGH
KGDQGIKGETGPEGQPGPRGPPGATGEPGKMLINNNENDIRNVQLMGPPGLPGPPGIPGA
KGEVGLPGPPGLDGEKGPRGKAGEPGAIGPPGLRGEGGVMGFPGPKGDKGDMGPSGSPGL
DGPTGEKGAAGAPGPIGLPGSMGQKGDAGENGVKGEQMYGLPGPPGPAGPVGPMGPPGLS
GPKGEPGLGVRGEKGSPGQKGDKGDRGHLGLPGAHGLDGKPGPVGLIGPPGIPGPAGPKG
ERGEKGEMGVAGPIGPQGIPGLVGPPGLKGNRGERGKRGNRGAKGDKGDQGAPGLDAPCP
LGDDGLPVPGCWNKGQNPFQLAKK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggaacaagacaccaaagtttctcgcgattcacctggagaaaggacttgcgccgagcat
ccgtgtaaaagtggcgcctggccgaggcgcacggaggtgtgtggtgcggtggcggtgtgc
gtcgcgctctgcctcctctctctcggagtgtctgtgctgttttatttgcgcacctcggag
ctacaggccagggtaaacagcttggagaagcacagagagccccagcagcactcagcctgg
atgtttcttgagcaggtggaaccagtgctcttaaatcgcctggatcagatgctggaagag
aagttagcatctcgtctgccaaagaccagagagactcgggatgtctcccacgcctgtctg
tgtccaccaggacctcctggtcctcctggacgagctggctttccgggagacaaaggatca
atgggcattcctggaagaatgggcttaaagggaaacacaggggacaagggagctccaggg
gagccaggtctatctatcattggcccacgaggacctcctggtcagccgggcactagagga
tttcctggctttccgggtcctattggtttggatggcaagcctgggcaaaatggtcagaaa
ggagacatgggtgcacctggtcccaaaggacttcctggtgaacaaggtccaaagggggaa
aagggagtgtgtggtgattatacacatcggatgttgcccatcaccgtgcgcaacatgccc
tcaataagccctctaattctaaagcgcctcaagcagggtgagcctggagcacaaggaccc
ccagggcctcctggtcctccagggcctcctggtagcccaggattgactggtgctaatggg
ccaccgggaaaacctggagaacctggaaaaccaggaaaagatgtgaggatgttgacagca
atgaagggagaaccaggtgtaccaggacaaaagggtgatcgtggtgatacaggattaact
ggacctgaaggccccaggggattcaaaggggatcaaggacagaagggagaggaggggaag
atgggtcttgcaggagagaaaggagagaagggtgaaagagggatgcctggaatgccagga
aaacaaggagtaaagggagaacttggttttccaggtgctcctggactaaagggtcagaca
ggtattcccggtattccggggaagcgaggctataagggtgaaaagggggaaatgagttct
acaggagttggtgttaaaggagaaccaggagtgccaggactgccaggacacaagggtcat
aaaggtgatcaaggcattaagggtgaaacaggacctgagggtcaaccaggaccaagaggt
cctccaggtgcaacaggagaaccaggcaaaatgttaataaacaacaacgagaacgatatt
cgtaatgtgcagctaatgggcccacctggtctacctgggcctcctgggatacctggtgcc
aagggtgaagttgggctgcctgggcctcctggtcttgatggggaaaagggtcctcgggga
aaagcaggagaacctggagccattggcccacctggactgcgaggagagggaggagttatg
ggcttcccgggacctaaaggggataaaggagacatgggtccctctggatcacctggttta
gatggccctactggtgaaaagggggctgcaggggctcctggccccattggattaccaggc
tccatgggtcagaaaggtgacgctggagagaatggagtaaaaggagaacagatgtatggc
ctaccaggacctccaggacctgcagggccagtggggccaatgggacctccaggattgtca
gggccaaagggggagccaggtctgggtgtgagaggagagaaaggatcacctggacagaaa
ggagataaaggagatagaggtcatcttggattaccaggggctcatggtttagacggcaag
cctggtccagtgggtcttataggaccgcctggtatacctggaccagcaggaccaaaagga
gagaggggtgagaaaggagaaatgggagtagcaggaccaatagggcctcaaggcatccct
ggcttagtaggaccaccaggattaaaaggaaaccggggggagaggggcaagagaggcaac
aggggggccaaaggggataagggagaccaaggagccccaggattagatgccccttgtcct
ttgggtgatgatggcctaccagtaccaggatgttggaataaaggtcagaatcctttccag
ctggctaagaagtaa
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