Taeniopygia guttata (zebra finch): 100224917
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Entry
100224917 CDS
T01082
Symbol
SOX18
Name
(RefSeq) transcription factor SOX-18
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tgu03000
]
100224917 (SOX18)
Transcription factors [BR:
tgu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
100224917 (SOX18)
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Gene cluster
GFIT
Motif
Pfam:
Sox17_18_mid
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
100224917
NCBI-ProteinID:
XP_002197989
Ensembl:
ENSTGUG00000007265
UniProt:
H0ZA76
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All DBs
Position
20:complement(8599364..8603384)
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AA seq
417 aa
AA seq
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MNISESNYCREEISQPRGDCSWVTAAVPAAEPGLAFPRPPGAASPASRTPSPEPGFAFGP
GPGGAAPGAAPSRTPSPEPGYGYSPPAGRPEGKAAEDSRIRRPMNAFMVWAKDERKRLAQ
QNPDLHNAVLSKMLGQSWKALSASDKRPFVEEAERLRIQHLQDHPNYKYRPRRKKQAKKI
KRMEPNILLHNLSQPCSDNFSMSHHGGSQPGHPQPPPLNHFRELHSMGSDIENYGLPTPE
MSPLDVLEQTEPAFFPPHMQDDCNMMPFRGYHHHHQMEFPQEKCMGRDVAVPYTQTPSHL
ADAMRTPHPSSLYYNQMCSGTQNGLSAHLGQLSPPPEAHHMESVDHLNQTELWTDVDRNE
FDQYLNMSRTRPEASGLPYHVSLSKVTPRSISCEESSLISALSDASSAVYYSPCITG
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatctgagtctaactactgccgagaggagatatcgcaaccccggggcgactgt
tcatgggtcaccgccgccgtgccggccgctgagcccgggctcgccttcccgcgccccccg
ggagccgcctcccccgccagccgcacgcccagccccgagcccggcttcgccttcggcccc
ggccccggcggcgcggcccccggcgcggcccccagccgcacgcccagccccgagccgggc
tatggatacagccccccggccggccgccccgagggcaaggccgccgaggactcccgcatc
cgccggcccatgaacgccttcatggtctgggcgaaggatgagcgcaagcggctggcgcag
cagaaccccgacctgcacaacgccgtgctcagcaagatgctgggccagtcctggaaagcg
ctgagcgccagcgataagcgtcccttcgtggaagaggcagagcgactgcgcatccagcat
ctccaggatcaccccaactacaagtaccgcccaaggagaaagaagcaagccaagaaaatc
aagaggatggaacccaatatcctcctgcataacctttcccagccttgcagtgacaacttc
agcatgagtcaccatggcggcagccagccgggccacccccagcctcccccacttaaccac
ttcagagaactccactccatggggtcggatattgaaaactatggcttgccaactcctgag
atgtctcccttggatgtcttggaacagaccgagccggcgtttttccctccgcacatgcag
gatgactgcaacatgatgccctttcgcggctaccaccaccatcaccagatggagtttccc
caggagaagtgcatggggcgggacgtggccgtgccctacacgcagaccccctcacacttg
gccgacgccatgaggactccccatccctccagcctttactacaaccagatgtgctcagga
actcagaacgggctttccgcccacctgggccagctgtcgccccctcctgaagcccaccac
atggagagcgtggatcacttgaaccaaaccgagctctggacagacgttgaccgcaacgag
tttgaccagtatttgaacatgagcaggactcgtcccgaagcctcgggcctcccttaccat
gtctccctgtccaaagtgactcctagaagcatctcctgcgaggagagcagtttgatatcc
gccctgtccgatgccagcagtgctgtttactatagcccctgcatcactggttag
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