Taeniopygia guttata (zebra finch): 115495719
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Entry
115495719 CDS
T01082
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
tgu
Taeniopygia guttata (zebra finch)
Brite
KEGG Orthology (KO) [BR:
tgu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tgu00536
]
115495719 (COL13A1)
Glycosaminoglycan binding proteins [BR:
tgu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115495719 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115495719
NCBI-ProteinID:
XP_032604920
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Position
6:1833486..1926897
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AA seq
810 aa
AA seq
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MLEEKSWKGVDEAAFDRGCVAPPRSGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTHQRC
NCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSVIGPRGPPGQPGTRGFPGFPGPI
GLDGKPGHPGQKGEMGAAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKR
RTFQGEQGQAGIQGPPGPPGPPGPAGPAGPEGIPGRPGPIGPPGRAGEPGKPGRDGKGLP
GPPGPKGETGIQGYPGRKGEVGESGLPGARGLPGASGPKGEKGDAGIKGERGMPGLPGRH
GSKGAPGMAAAGMKGEPGTPGEKGDSGVPGRMGPPGLPGKRGQRGEKGRAGDPGIPGLPG
PKGEKGIAENALVGAKGEPGPPGLPGPPGPKGEAGDVGQPGAAGSPGEKGERGSPGDQGP
MGPRGPKGEPGKDEMMDYDGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPG
PPGHDGEKGPRGKPGEMGPPGLQGLPGKDGPPGIKGEPGHVGVRGEKGEKGEAGQAGSPG
LDGPTGEKGEQGDQGIPGPSGLPGPIGLPGLTITGPPGPQGPPGPPGLQGVPGPKGEAGI
DGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGV
AGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGLRGFKGEK
GEPGLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggagtcgacgaagcagcttttgacagggggtgtgtg
gctccccccaggagtggcgatggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcccggcgtgtccctgctctctctggtgctgagcctcctgctgtactttcggacc
tccgatctgcagtcccgggtgtcccacttggaagcagacagacccacgcagctccctgcc
tggctctcagcagaccaaatggagacagctattttgggaagagttgaccaactgctcaat
gagaaattaaagttccatttgccaagacatcgagaagttcgagacacacaccagcgatgc
aactgcccggcaggtccgcctggggacaaaggtgcgatgggaatccctgggcggccggga
ctaaaagggcagtctggagagaagggtgctccaggagaagctggcatgtctgtcatcggg
ccccgcggtccacccggacagcctggaacaagaggttttcctggattcccgggccctatt
ggcttggacggcaaaccggggcatcctggacagaagggagagatgggtgctgcaggtccc
aggggacaacctggacccccaggacaaaaaggagagaagggtcagtgtgcagagtacccg
cacaggctgctgcctctcctcaattcagtgcggctggctccacctccggtcataaagaga
cgcactttccagggtgaacaaggacaggcagggatccaaggtcccccggggccccctggt
ccaccagggcccgctggaccagctggacctgaaggaatcccaggacgtcctgggccaatt
ggaccccctggcagagcaggagaacctggaaagcctggcagagatgggaagggcttacct
gggcctcctggaccaaagggagaaactgggatccagggataccctggcagaaagggtgag
gtgggcgagtcaggcctgcccggtgcccgtggtctccctggagcctctggccccaagggt
gaaaaaggggatgctggcataaagggggagagaggcatgccagggctgccaggaagacat
ggctctaagggcgctcccgggatggcggccgcagggatgaagggcgagcctgggactcca
ggagaaaagggagattctggagtgccagggaggatgggccccccaggtttgccagggaag
agggggcagcggggtgaaaagggacgagctggtgatcctggaattcctgggcttcctggc
ccaaagggagagaaaggaattgctgagaatgccttggtgggagctaaaggagaacctggc
cctccaggtctgcctggaccccctggaccaaagggagaagctggtgacgttggtcagcct
ggtgctgcaggatcaccgggagaaaagggggaacgtggttcaccaggagaccagggaccc
atgggcccaaggggccccaaaggagagcctgggaaggatgaaatgatggactatgatggg
aacatcagtgaagctctccaggaaatacgaactttggccttgatgggacctccaggacgt
ccaggtgtagctggacctccagggccaccaggacagaagggtgaaattggcttgccaggt
cctccaggccacgacggagaaaagggaccacgtggcaagcctggagaaatgggccctcct
gggcttcagggactgccaggaaaggatggaccccctggaataaagggagagccaggccac
gtcggggtcagaggagaaaagggcgagaagggagaggcaggacaagcaggctcaccgggt
ctagatggccccactggagagaaaggagagcaaggtgaccaagggataccaggaccatca
ggattgccagggcccattggacttccaggattgacaataactgggccccctggacctcaa
ggccctccaggacctccaggtcttcagggtgtcccaggacccaagggggaagcagggatt
gatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagagggccactggga
ttacccggtgcttcaggtttagacggcaggcctggaccaccgggtattccaggaccaatt
ggggtttcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagtt
gcaggaccaatggggccagcagggcttcctggtttacaaggtctgcctggtgacaaggga
gtccggggggagaggggcaagaaaggctctagagggtctaaaggggataagggagaccaa
ggagcacctggattagatgcaccctgtccgttgggtctccgaggttttaaaggcgagaag
ggtgagccggggctacctgggctggacggcctggatgccccatgcccattgggagaagat
ggccttccagttcaaggctgctggaataagtga
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