Thalassotalea sp. LPB0316: LP316_09980
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Entry
LP316_09980 CDS
T08426
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thab
Thalassotalea sp. LPB0316
Pathway
thab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LP316_09980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thab03400
]
LP316_09980 (mfd)
Enzymes [BR:
thab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LP316_09980 (mfd)
DNA repair and recombination proteins [BR:
thab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LP316_09980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOL24670
UniProt:
A0A7L9S3X4
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Position
complement(2249272..2252778)
Genome browser
AA seq
1168 aa
AA seq
DB search
MSKLSQLYAPILTAEFKRKVDKKAWHGLVGSSATLAIYQAALQADKPLLVITDDTPSAIR
LEHELHSINSQQLSLCLFPDWETLPFDSFSPHQDIISQRLATLYQLPRMSSGIIIVPVTT
LVQKLSPRQYLEQSALMIKVGDTLDLHQVRVNLEANGYRCVDQVMEHGEFSVRGAILDLF
PMGSNAPYRLDFFDDEIDEIRLFDTENQRSTDKLDAINLLPAREFPTDQEGINLFRKQYR
ELFTGAIDKESIYHQVSSGVMPAGIEYYLPLFFEQTSTLFDYLADNTLLIIQGDIEKSVA
HYWHDITYRYEDRRYDPTRPLVPPEQLYLKIDELYGQLNQFQRINIVKPPSDVQSTADIG
FDVELLPQVAVNHQLKQPFTSLNSFLQSQQSIKPPARTLFVAESQGRRESVLELLKKNQL
SPKLFKNFDDFINADDTIGITVNSFANGFIFKHKKQLFNVITETELLGDVVRQSRRRGKQ
QDGQADAIFKNLAELSIGQPVVHLEHGIGRYMGLQTLENGGLTTEFLVLSYANEAKLYVP
VASLHLISRYSGTDAEHAPLHKLGNEGWTKAKQKAAEKIKDVAAELLDVYAKRASHKGYS
FKINPDEYQAFANSFGFEETLDQEQAINAVIHDMQQPTAMDRLVCGDVGFGKTEVAMRAA
FIAANDAKQVALLVPTTLLAQQHYENFRDRFADLPINIEVLSRFKTPKQQKAIIDDVEAG
NIDILIGTHKLLQNSIKYHDLGLLIVDEEHRFGVKQKEQVKKLRANVDILTLTATPIPRT
LNMAMGGMRDLSIIATPPAKRLAVKTFVRQREDNLIREAILREILRGGQVYFLHNNVDTI
EKTALDIQALVPEAKIITAHGQMRERELEKIMSDFYHQRFNVIVCTTIIETGIDVPSANT
IIMDRADNLGLAQLHQLRGRVGRSHHQAYAYLLTPHEKRMTKDAKKRLDAIASLEDLGAG
FTLATHDMEIRGAGELLGEDQSGQMSQIGFSLYMEMLDNAVTALKEGKPLSLEEVTSKQT
EIDLRLPALLPEDYIFDVSLRLSIYKRIASCTTKQALDDIQVELIDRFGLLPQATKNLIQ
IAKLKLKAQKIGIARIDAHDNGGVIEFSDDTNVDPMQIISMIQKQPTVYKMEGANKVKFV
KKTDSTQARFTLITSIISDLSPASGGKK
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaactatctcagctttacgcgcctatacttaccgctgaatttaaacgcaaagtc
gacaaaaaagcgtggcatggcttagttggctcaagtgcaacgttagcgatttatcaagct
gcgctgcaagccgataagccactactcgtaattaccgatgacacgcctagtgcgatccgt
ttagaacacgagttacacagcatcaacagccaacagctcagcttatgcctattccccgat
tgggagaccttgccgtttgatagcttttcgccacatcaagatattatttctcaacgctta
gcgactttataccaactgccaagaatgtcgtcaggcattattattgtgccggtaacgacc
ttggtgcaaaagctgtcaccgcgacaatatttagaacaaagcgccttgatgatcaaggtt
ggcgataccctagatttacaccaagtaagggtaaatcttgaagccaatggttatcgctgt
gttgatcaagtcatggagcacggtgagttttcagtaagaggtgccattctcgatctcttc
ccgatgggcagtaatgcgccttatcgccttgattttttcgacgatgaaattgatgaaatt
cgccttttcgacacagaaaatcagcgctctacagataaactcgatgcgattaatttgttg
cccgctcgcgagtttcccactgaccaagaaggtattaatttatttagaaagcagtaccgt
gagttatttaccggcgccatcgataaagagtcgatttatcatcaagtcagttccggtgtc
atgccggccggtattgaatattacttgccgctgtttttcgagcaaaccagtaccctattt
gattacttagccgataacacgttattgattattcaaggcgatattgaaaagtccgttgcc
cattattggcacgacatcacctatcgttatgaagacagacgctacgaccctactcgcccc
ttagtgccaccagagcagttatatctcaaaattgatgagctatacggtcagcttaaccaa
tttcaacgtattaatatcgttaagccgccaagtgacgtgcaaagcacagctgatattggt
tttgacgttgaattgctaccacaagttgcggttaatcatcagctaaagcagccgtttact
tcactcaatagctttttacaaagtcagcagtcaattaagccaccggcaagaacgctattc
gtcgctgaaagccaaggtcgccgtgaaagtgtattagagctactgaaaaagaatcagtta
tcgccaaaattatttaaaaactttgacgactttatcaatgctgatgacactatcggtatt
acggttaacagctttgctaacggttttatctttaagcacaaaaagcaactgtttaacgta
atcaccgaaacggaattactcggtgatgtggtcaggcaatcgcgccgccgtggcaaacaa
caagatggccaagccgatgcgattttcaaaaacttagccgaattatccattggccaaccg
gttgttcaccttgaacacggtattggccgttatatggggttacaaacgctagaaaatggc
ggtttaaccactgaatttttggtgctcagttacgccaatgaggccaagctctatgtccct
gttgcctcactgcatttaatttcacgctattcaggtaccgatgctgagcacgcaccattg
cacaaactaggcaatgaaggttggacaaaagccaagcaaaaagcggctgaaaaaattaaa
gatgtcgctgctgaactactagatgtctacgccaagcgtgcaagccataaaggctatagc
ttcaagataaatcctgacgagtaccaagcctttgctaacagtttcggttttgaagagacc
ttagatcaagagcaagcgatcaacgcggtgatccatgacatgcaacagccaactgcgatg
gacagattagtttgtggtgatgttggctttggtaaaactgaagtcgccatgcgcgccgca
tttattgctgccaacgatgccaagcaagtcgcgttattagtaccaaccaccctgcttgct
cagcaacactatgaaaactttcgcgatcgctttgccgacttgccaatcaacatcgaagta
ttatctcgctttaaaacgccaaaacagcaaaaggcgatcattgatgatgtagaagccggt
aatattgatatcttaattggcacccataaattgctacaaaactcgataaaatatcacgat
ttaggcttgttaattgttgatgaagagcaccgctttggcgttaaacaaaaagagcaagtg
aaaaaactgcgcgccaatgttgatattttaacgctaactgcaacgccaattccaagaacg
cttaatatggcgatgggcggcatgcgtgacttatccatcatcgcaaccccgccagctaag
cgattagcggttaaaacctttgttcgtcagcgcgaagataacctcattcgcgaagccatt
ttgcgtgaaatactgcgcggtggtcaggtctatttcttgcacaataacgttgatactatt
gagaaaacggcgcttgatattcaagccctcgtgccagaagccaaaattattaccgcccac
ggtcaaatgcgcgagcgcgaactagaaaaaatcatgagtgatttttatcatcaacgcttt
aatgtaattgtttgtaccaccattattgaaaccggtatcgatgtaccgagcgctaatacc
attatcatggatcgagccgataacctaggtcttgctcagctgcatcaattgcgcggtcgt
gttggtcgctcgcaccaccaagcctatgcctatttattaacgccgcatgaaaagcgcatg
accaaagatgcgaaaaagcgccttgacgccattgcctctcttgaagatttaggcgccggc
tttaccttggcaactcacgatatggaaattcgtggcgccggtgaattactcggtgaagat
caatcgggccaaatgagccaaattggttttagcctatatatggaaatgctggataacgcg
gtaacagcgcttaaagaaggcaaaccgctttcgcttgaagaagttacttctaagcaaacc
gagattgacttgcgcttgccagccttactaccagaagactatatttttgatgtcagttta
cgactgagtatttataaacgcattgccagctgtacaactaaacaagcgcttgacgatatt
caagtagagttaatcgaccgctttggcttattaccgcaagcgactaagaacttaattcaa
attgctaagttaaaactcaaagcacaaaaaatcgggattgcccgtatcgatgcgcacgat
aacggtggtgttatcgaatttagtgatgatactaacgttgatccgatgcaaattatctcg
atgatccaaaaacagccaacggtttataaaatggaaggggccaataaggttaagttcgtt
aagaaaaccgactcaacacaagcaagatttaccctgataacctcgattattagtgacttg
agtccagccagtggtggtaagaaatga
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