Thalassomonas haliotis: H3N35_22505
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Entry
H3N35_22505 CDS
T08805
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
that
Thalassomonas haliotis
Brite
KEGG Orthology (KO) [BR:
that00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
that03019
]
H3N35_22505 (hrpB)
Enzymes [BR:
that01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H3N35_22505 (hrpB)
Messenger RNA biogenesis [BR:
that03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H3N35_22505 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
HA2_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDE10981
LinkDB
All DBs
Position
complement(5240203..5242773)
Genome browser
AA seq
856 aa
AA seq
DB search
MPLILLCIKDITLTKSLPIDDFLPEITQLLTANNTLVLQADPGAGKSTKVPLSLLKANIG
AGKKIVMLEPRRLAAKSIATYLAGQLGEKVGQSVGYQVKNDNTCSKTTLLEIVTEGILTR
RIQHDPELADIGLIIFDEFHERSIHADLSLTLGLEIQQALRDDLKILVMSATIDTAAISE
FLSSAPVVICPGRVFPVQTTYLPRPMPTTGRYSYLETLKKTAATAFREHQGDILIFLPGK
AEINKAIETLAVDYRDLDVLLLPLYGELSADKQQQAILPDGKGRRKLVFTTNVAETSLTI
EGIRCVIDTGLSKRSLYDPSSGMTRLVSCMVSKASAEQRKGRAGRLSEGNCYRLWTESQH
RQLADYYEEEIKVVDLASLVLELAMWGVKQISELSWLTPPPATHFQQAKNLLTEVGLLDE
DGAITETGQQGISLGIEPRFAKMLMQGKKWQQLTLACDLAALLSERDIFTGGQGADLNAR
LVALQDYRLQRTKAREQHPLATFSAEQALQNSRNWQRKLGGDKQARAYTLADIHQYSGQL
LALAYPDRIAKRRPGHAANFQLANGKGAMLFEDDSLAEEAFLVAPQVDGQKTQGRIYLAA
PVALEAIKSLFSDQLEQKSQYSYDKEKNKISGTVEHKLGALVLGRQTITKPDQAAIETCL
LAAVKETKLAILPWDKSCQSWLDRARWLALYDSSFEVFTEQIMLEQLSLWLQPYLSGITS
VAELKKINLLSILKQTLDWSKQEELEQQAPQYYLTPSDKKVKITYSPQHNPKVSVVLQEV
FGELASPLLAWGKAPLCFELLSPAKRPIQVTSDLNHFWQNSYFEVAKDMRGRYPKHRWPE
QPLLEKAGRSIKTRRS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgatattactttgcattaaagacataaccttgactaaatcactgcctattgac
gatttcctgcctgagatcacccagttactgacagcaaacaataccctggtattgcaggcg
gaccccggtgccggtaaatccactaaggtgcccctgtccctgttaaaggcgaatatcggc
gcaggcaaaaaaatagttatgcttgaacccaggcggttggcggctaagtcgatcgccact
tatctggccgggcagttaggggaaaaagtcgggcaaagtgtcggttaccaggtaaaaaac
gataatacctgctctaaaaccaccttgttggaaattgtgaccgaaggtatcctcacccgc
aggatccagcacgatcccgagctggcggatatcggcctgatcatttttgatgaatttcac
gagcgctcgatacatgcggatttgtcgctaaccctgggcctggaaattcagcaggcgctg
cgcgatgatctgaaaattctggtgatgtccgccaccatagacacggcggcaatcagcgaa
tttttatcctccgcgcctgtggtgatttgtcccggccgggtatttccggtgcagaccact
tatttgccccggccaatgccgacaaccggcagatatagttatctggagacgttaaaaaag
accgcggcaaccgcctttcgcgagcaccaaggtgatattttgatatttttgccgggtaag
gcagaaatcaataaggcgattgaaaccctggcggtcgattaccgcgatctggatgtattg
ctcttgcccttatatggcgaattgtcggcggacaagcagcagcaggcgatattaccggac
ggtaaagggcggcgtaagctggtgtttactaccaatgttgccgaaaccagtttgaccata
gaaggcatacgctgcgtgatcgataccgggttaagcaaaagatccctgtacgacccctca
agcggcatgacacgtttggtaagttgtatggtgtctaaggcctcggcggagcaaagaaaa
ggccgggccgggcggctcagtgaaggcaattgctaccggttgtggaccgaaagtcagcac
cggcagctggcagattattacgaagaagaaatcaaggtcgttgaccttgcctccctggta
ctggaactggcgatgtggggggttaagcaaatttcagagcttagctggttaacgccgccg
ccggccacgcattttcagcaggcgaaaaacctgcttaccgaagttggtctgctcgatgaa
gacggcgccattaccgaaaccggccagcagggcatttccttgggcatagaaccgcgtttt
gccaaaatgctgatgcaggggaaaaaatggcagcagctgaccctggcctgcgatttggcg
gcgctgttgtccgaacgggatatttttaccggcggccagggcgcagatctcaatgcccgg
ttagtggccctgcaagattaccgcctgcagcgtaccaaggcccgcgagcagcatccctta
gcaactttttccgccgagcaggcactgcaaaacagccgaaactggcagcgaaaacttggc
ggcgacaaacaagcccgggcttataccctggctgatattcatcaatacagcggacagttg
ctggcgctggcctatccggacagaatagcaaaacgccgccccggccatgccgccaacttc
cagctggccaacggtaaaggggccatgctgtttgaggatgacagcctggcggaagaagcc
tttttagtcgcgccccaggtggacggacaaaaaacacaggggcgcatctacctggcggca
ccggttgcgctggaggccattaaatccctgtttagcgaccagctggagcaaaaaagccag
tacagttacgacaaagaaaaaaataaaatatccggcacggtcgagcataagttaggggca
ctggttcttggcaggcaaaccataaccaagccggatcaagcggcgatagaaacctgcttg
ctggcggcggtaaaagaaaccaagttagccattttaccctgggataaaagctgccagtcc
tggctggacagggccaggtggctggcgttatatgacagcagttttgaggtctttaccgag
cagatcatgctggagcagttatctctatggttacagccttacctgagcggtatcacttcg
gttgccgagctgaaaaaaatcaacctgctgtcgatattaaagcaaaccctggactggtcg
aagcaggaagagctggagcaacaggcgccgcaatattacctgacaccgtcagataaaaaa
gtcaaaatcacctacagcccgcagcataatcccaaagtgtctgtggtgttgcaggaagtt
tttggtgagctggcatcacccctgctggcctggggcaaggcgccgttatgttttgaattg
ttatcaccggcgaaaaggccaattcaggtgaccagtgacttaaatcacttctggcaaaac
tcctattttgaggtggcaaaagatatgcgcggccgttatccgaaacatcgctggccggag
cagcctttgctggaaaaagcaggcagatccattaaaacccgcagatcttag
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