Thiohalobacter sp. COW1: TspCOW1_18620
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Entry
TspCOW1_18620 CDS
T08363
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
thic
Thiohalobacter sp. COW1
Pathway
thic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TspCOW1_18620 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thic03019
]
TspCOW1_18620 (rhlB)
Enzymes [BR:
thic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TspCOW1_18620 (rhlB)
Messenger RNA biogenesis [BR:
thic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TspCOW1_18620 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCO31759
UniProt:
A0A7R7GLS0
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All DBs
Position
complement(2018354..2019667)
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AA seq
437 aa
AA seq
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MTQETENTTLFSSLNLSPAVLQGIEEAGFTSCTPIQARALPPLLAGRDVAGQAQTGTGKT
AAFLVAVFEHLLRHPPADERRPNQVRALILAPTRELAVQIYNDAVTLGKHTGLTFAAVYG
GTGYEEQAQRLREGVDVLIGTPGRTIDYFKQHLFDLRHARAVVLDEADRMFDLGFIKDVR
YLLRRCPPPEQRLGLLFSATLSWRVTELAYEHMNDPGIIRVEPEQVTAEKVRQVLYHTAN
AEKIPLLIGLLKRMDAHRTIVFVNTKHQAERVWGYLEGNGIKAAILSGDVPQNKRLRLLQ
QFQSGELPVMVGTDVAARGLHIPDVSHVINFDLPQEAEDYVHRIGRTARAGAEGDAISFA
CENYVYSLPEIEDYIGYKLPVEAVDESLLGEVQPPVRRERRKRPPGGGGRGRGGGGRPHG
EGGRQRQGRRGSGRRQD
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagaaactgagaacacaacccttttttcctccctgaacctgtcgccggcagtc
ctgcaaggtattgaagaggcaggttttacgagttgcaccccgatccaggcccgggctctg
ccgcccctgctggccgggcgcgacgtggccgggcaggcccagaccgggaccggcaagacc
gccgcttttctggtggcggtgttcgaacatctgctgcggcatccgccggcggatgaacgt
aggccgaaccaggtcagggcactgatcctggcgccgacacgcgagttggcggtgcagatc
tacaatgacgccgtcacactcgggaaacacaccgggcttaccttcgccgccgtctatggc
ggcaccggctacgaggaacaggcacagcgcctgcgcgagggggtggatgtgctgatcggc
acgccgggacgcaccatcgattacttcaagcagcacctgttcgacctgcgccatgcccgg
gccgtggtgctggacgaggccgaccgcatgttcgacctcggcttcatcaaggatgtgcgc
tatctgctgcgccgttgcccgcccccggagcagcgcctgggactgctgttctccgccacc
ctgtcctggcgggtgacggaactggcctatgagcacatgaacgatcccgggatcatccgg
gtcgagcccgagcaggtcaccgctgagaaggtgcgccaggtgctgtatcacaccgccaac
gcggagaagatcccgctgctgatcggactgctcaagcggatggacgcgcaccgcaccatc
gtgttcgtcaacaccaagcaccaggccgagcgggtctggggctatctggagggcaacggc
atcaaggccgccatcctctccggcgacgtgccgcagaacaagcgcctgcggctgctgcag
cagttccagtccggcgaactgccggtgatggtcggcaccgacgtggctgcgcgcgggctg
cacattccggatgtgagccatgtgatcaacttcgacctgccgcaggaggccgaggattat
gtgcatcgcatcggccgcacggcgcgggccggggccgagggtgatgccatcagcttcgcc
tgcgagaactacgtctattcgctgccggagatcgaggactacatcggctacaaactgccg
gtggaggcggtcgacgagtccctgctcggcgaggtgcagccgccggtgcggcgggagcgc
cgcaagcgcccgcccggcggtggcgggcgcggccgtggcggcggcggacggccgcacggc
gaaggcggtcggcaacggcagggcagacgcggcagcggacgccggcaggactga
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