Thiohalocapsa sp. PB-PSB1: N838_00710
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Entry
N838_00710 CDS
T07019
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thip
Thiohalocapsa sp. PB-PSB1
Brite
KEGG Orthology (KO) [BR:
thip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thip03019
]
N838_00710 (hrpB)
Enzymes [BR:
thip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
N838_00710 (hrpB)
Messenger RNA biogenesis [BR:
thip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
N838_00710 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_22
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QQO52112
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All DBs
Position
134265..136829
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AA seq
854 aa
AA seq
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MPRLPIEPVLPRLSAALAQGHAVLTAATGSGKTTRVPLALLEEPWLADQRILMLEPRRPA
ARMAASHMAAVLGESVGERVGYQVRFDRRIGAHTRIQVLTEGILTRRIQQDPELQGVGLI
ILDEFHERGLNADLSLALALDATVLRPRLRILVMSATLDSLAVSELLDGAPIIQGEGRAY
PVEIRYPEHAPADPVDAASAAVLVALSENNGDVLAFLPGTAEIEQVRQRLAEQLANDLDL
LPLHGNLSLEQQERALRPDGSGRRRVVLATDIAETSLTIEGIGVVVDTGLTRKPRFEPGR
GLTRLVTEPISRASAQQRTGRAGRLGPGVCYRLWTQAQEQRRPAHRPAEILQADLAALAL
ELALWGVTDPHALRWLNPPPAAAWSQGVDLLAALGALDRSGAITAVGRRMAGLPLHPRLA
HMLTAAAATTSPLAADLAALLEERDPWIWRRGSPRPVDLTPRLEALESLRHKRHPRSTEN
IDVRRLRVIARLSDQYRRLLQKQVCDPGSTPVLADEAGAELSAGALLALAYPDRIAQNRG
GNGERFLLTSGIGAALPANDALAVEPYLVVADLDVAHGDHRMRAALPISEAELRTLMSAQ
INSRSVLTWDQQREAVTARGEQRLGALLLSAQAIPITNADAALQLLLQAISDNLEHALHW
TPDARQLQARGQLARHLQPDADWPDLSDAWLAAHTESWLGPWLTGKTRFADARALDLMAI
LKQTLGWQRASRLDALAPESLVTPAGTNRRIDYCADPAGNEPTPVLAAPMQEFFGAPQTP
TIFEGRLPLLLHLLSPARRPLQVTSDLAGFWNGAYAEVRKEMRGRYPKHHWPEDPANALP
IAGGLRRHVGRRSA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgcccagattgccgatcgagccggtactgccaaggctcagcgcggcgctggcccaaggg
cacgcggtgttgacggcggccaccggctcaggtaagaccacgcgggttccgcttgcattg
ctcgaggaaccctggctcgccgaccagcgcatcctgatgctggaaccgcgccggcccgct
gcgcgcatggctgcctcacacatggcggcggtgctcggcgaatcggttggcgaacgggtt
ggctatcaggtgcgcttcgacaggcgcatcggcgcccatacccgcatccaggtattgacc
gaaggcatcttgacccgccgcatccaacaggatccagaactgcaaggggttgggctgatc
atcctggatgaatttcatgagcgcggcctgaatgccgatctcagccttgccctcgccctg
gacgccactgtcttgcgtccgcggctgcgcatcctggtcatgtccgcaacccttgatagc
cttgcggtttctgaactgctggacggagcaccgatcatccagggtgaggggcgggcttat
ccagtggagatccgctacccggaacatgcgccggcagatcccgtcgatgccgccagcgct
gcggtgcttgtggcgctgagcgagaacaacggcgatgttctcgcgttcttgcccggtacc
gccgaaatcgaacaagtcaggcaacgacttgcggagcagctcgccaatgaccttgatctg
ttaccgttgcatggcaatctgtcgctggagcaacaggagcgcgccttacggcccgatggt
agcggccgacgccgcgttgtgctcgccacggacattgccgagacctcgctgaccatcgag
ggcatcggcgtggtggtcgacaccggcttgacccgcaaaccccgctttgaaccaggccgc
ggactcacgagactggttaccgaacccatctcgcgggcatcggcacaacagcgcaccggg
cgcgccggacggctcggcccaggtgtttgctatcgactctggacgcaagctcaggagcaa
cgtcgcccagcgcatcgcccagcggaaattctgcaagccgatctcgccgcattggcgttg
gaactcgccctgtggggcgtgaccgacccgcacgctctgcgctggcttaatccgccaccc
gcggccgcctggtcgcagggggtcgatctgctcgcggcattgggagccttggatcgatcc
ggtgccatcaccgccgtcgggaggcgcatggccggcctgccgttacatccgcgccttgcc
catatgctgacggctgcagcggcaacaaccagcccgctggccgcggatctggccgcgctg
ctggaagagcgcgatccatggatctggcgtcgcggcagtccgcgaccggtggatctgacg
ccgcggctggaggcgctggaaagcctgcggcacaaacggcatccgcgaagcacagaaaac
atcgatgtacgccgcctgcgggttattgctcggctcagcgaccaatatcgacgtttgctg
caaaaacaggtctgcgatcccgggtcaacaccggtattggccgacgaggccggcgcagaa
ctcagcgcaggtgccttgctggccctggcctacccggatcgtatcgctcagaatcgcggt
ggcaatggcgagcgcttcctgctcaccagcggtatcggcgcggcattgccggccaacgac
gcgcttgctgtcgagccctatctggtggttgccgacctggacgtcgcccatggcgaccat
cgcatgcgcgccgcgctgccgatcagcgaggcggaattgcgcacattgatgagcgcacaa
atcaacagccgatccgtgctcacctgggatcagcagcgcgaagccgtcacggcccgtggc
gagcagcgcctgggtgccttgctgctcagcgcgcaagccattccgatcaccaatgcggat
gccgcgctccagctcctgttgcaggccatttccgacaacctcgagcatgctctgcactgg
acaccggatgcgcgtcaactccaggcgcgcgggcagctcgcacggcatctgcaaccagat
gcagattggccggatttatccgacgcctggctcgccgcccacacggagtcctggcttggc
ccctggctgacgggtaagaccagattcgcggacgcccgtgcgctggatctgatggcaata
ctcaaacagaccctcggttggcagcgggccagccgactggatgcattggccccggaatcc
ctggtcacccccgctggcaccaaccggcgtatcgactactgtgccgaccccgccggcaat
gagccaaccccggtgctcgcggcaccgatgcaggaattcttcggcgcacctcagactcca
accattttcgaaggccgtctaccattgctgttgcatctgctctcgccagcccgacgcccg
cttcaggtaacaagcgacctggctggcttctggaacggcgcctatgccgaggtgcgcaaa
gaaatgcgcggtcgctatcccaagcaccactggcccgaagacccagccaatgcgctgccc
attgccggcggtttgcggcggcatgttggtcgccgcagcgcataa
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