Thioclava nitratireducens: BMG03_06005
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Entry
BMG03_06005 CDS
T04697
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thw
Thioclava nitratireducens
Pathway
thw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BMG03_06005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thw03400
]
BMG03_06005
Enzymes [BR:
thw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BMG03_06005
DNA repair and recombination proteins [BR:
thw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BMG03_06005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AQS47401
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All DBs
Position
1203767..1206175
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AA seq
802 aa
AA seq
DB search
MGSLDRYLEMRDFAQTPEPDGGTASGHLAPRYSIQKHDATRTHFDLRLEWEGVLLSWAIT
KGPSFDPGEKRLAVRTEDHPLDYLTFEGTIPKDNYGAGTVMLWDLGHWQPLIPVGKALKK
GHLHLRLHGARLTGEWHLIRMKTEGKRENWLLTKAEDAASGARDPVARYRRSVISQRTMR
EIAADKPPVETQGGKRPGFAKPQLATLSDKMVAGEGWWHELKFDGYRALIALGDGGPRVF
TRNGNDWTDRFEGLLPALAETDCDSALIDGEIVAGAGLDGFSELQKAITAGGPFRFYGFD
ILSRDGEDLRKAPLSERREVLEEVMKPLPALGPAQLSPVISKDPEGAFETICKAGGEGLI
AKRIDAPYRGTRSKSWMKVKCERRDEFVILGWQESDKRGRPFASLALGTAEGDGWRYIGK
VGTGFDEDQAEALAKAMKPLARKTAPADVEASEAKGMHWITPELVAEIRYAERTGGDRLR
HAVFLGLREDKPARTVRLDNDAPSEERPNGAGIGISSPERVVFEGAGYTKLDVARYYEAM
ADRILPHLAEHPVSLLRLPEGLGGERFFQKHAGRGFPDGIANVEITESDGKTAQYMMIRT
AEGLVAAAQMGTIEFHIWGSRVDRLERPDRLVFDLDPDEGLDFAGVKDAAFEIRDLLAEL
DMPSWPLLSGGKGIHVTVPLRRSAGWDTVRLFARVFSHLLVARSPKRYTAEMSKSKRKGR
IFVDWLRNGEGATAIAPYSLRARPGAPVAMPVSWDELKKVRKANAFDLGAALERDAEIAF
PDAVSISQGRVDKLKDMLDASE
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgggaagcctcgatcgttatctcgagatgcgcgacttcgcgcagacgccagagcccgat
ggcggcaccgcctcgggccatctcgcgccgcgctattcgatccagaaacacgacgcgacg
cgcacccatttcgatctgcgcctcgaatgggagggcgtgctgctgtcctgggcgatcacc
aagggaccgtctttcgatccgggtgaaaagcggctcgcggtgcggaccgaggatcacccg
ctcgactatctcaccttcgaggggacgatcccgaaggacaactatggcgcgggcacggtg
atgctgtgggatctggggcattggcagccgctgatcccggtcggcaaggcgctcaagaaa
gggcatctgcacctgcgcctgcatggcgcgcgactgacaggcgagtggcacctgatccgc
atgaaaaccgaaggcaagcgcgagaactggctgctgacgaaggcggaggacgcggccagc
ggcgcgcgcgatccagtggcgcgctatcgccgctccgttatcagccagcgcacgatgcgc
gagatcgccgccgacaagccgcccgtcgagacgcaaggcggcaaacgccctggcttcgcc
aagccgcagctggcgaccctgtcggacaagatggtcgcgggcgaggggtggtggcacgag
ctgaaattcgacggctaccgggcactgatcgcgcttggagacggcggcccgcgtgtcttc
acacgcaacggcaacgattggacggatcgcttcgaaggcctgctgcccgccttggctgag
accgattgcgacagcgccctgatcgacggcgagatcgtcgcaggcgcaggtctcgacggg
ttctcggaattgcaaaaggcgatcacggcaggcgggccgttccgcttctacggattcgat
atcctgtcgcgcgacggcgaggacctgcgcaaggcgccgctctccgaacgccgcgaagtg
ctggaggaggtgatgaagccgctccccgcgctggggcctgcgcagctctccccggtgatc
tccaaagaccccgagggtgccttcgagacgatctgcaaagcgggcggcgagggactgatc
gcaaagcgcatcgacgcaccatatcgcgggacccgctccaaatcgtggatgaaggtcaaa
tgcgagcgccgcgacgagttcgtcattctcggctggcaggaaagcgacaagcgtggccgg
cccttcgcctcgctcgcgctggggaccgccgagggcgacggctggcgctatatcggcaag
gtcggcaccggcttcgacgaggatcaggcggaggcgttggccaaggcgatgaaaccgctc
gcccgcaagaccgcgcccgctgatgtcgaggcatcggaggccaagggcatgcactggatc
actcccgaactggtagccgagattcgctatgccgagcgcaccgggggcgaccggttgcgg
catgcggtcttcctcgggctgcgcgaggacaagcccgcgcgcacggtacggctggataac
gacgcgccttccgaggagcgcccgaacggcgcggggatcgggatttcctcgcccgagcgg
gtggtattcgagggcgccggctataccaagctcgatgtcgcgcgttattacgaggcgatg
gccgatcgcatcctgccgcatcttgccgagcatccggtgtcgctgctccggctgcccgaa
ggtctgggcggcgagcgcttcttccagaaacacgcgggccggggctttcccgacgggatc
gcgaatgtcgagatcaccgagagtgacggcaagaccgcgcagtacatgatgatccgcaca
gcggaggggctggtcgcggccgcgcagatgggcacgatagagttccacatctggggcagc
cgcgtcgatcggctggagcggcccgaccggctggtcttcgacctcgaccccgacgaggga
ttggatttcgccggggtcaaagatgcggccttcgagatccgcgatctgctggccgagttg
gacatgccgagctggccgctcttgtccggcggcaagggtatccacgtgacggtgccgctc
cggcgcagtgccggatgggacacggtcaggctttttgcgcgggtcttctcgcatcttctc
gtcgcgcggtcgcccaaacgctataccgccgaaatgtcgaagtcgaagcggaaggggcga
attttcgtcgactggctgcgcaacggcgagggagcgacagcgatcgcgccctattcgctg
cgcgcacggcccggtgcgccggtcgcgatgccggtctcgtgggacgagctgaagaaagtc
cgcaaggccaacgccttcgatctgggcgcggcgctggagcgtgatgcagagatcgcgttt
cccgatgccgtctcgattagccagggtcgggtcgacaagctcaaagatatgctcgacgcc
tcggagtga
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