KEGG   Thioclava nitratireducens: BMG03_06005Help
Entry
BMG03_06005       CDS       T04697                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
thw  Thioclava nitratireducens
Pathway
thw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:thw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BMG03_06005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:thw03400]
    BMG03_06005
Enzymes [BR:thw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BMG03_06005
DNA repair and recombination proteins [BR:thw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BMG03_06005
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AQS47401
LinkDB All DBs
Position
1203767..1206175
Genome map
AA seq 802 aa AA seqDB search
MGSLDRYLEMRDFAQTPEPDGGTASGHLAPRYSIQKHDATRTHFDLRLEWEGVLLSWAIT
KGPSFDPGEKRLAVRTEDHPLDYLTFEGTIPKDNYGAGTVMLWDLGHWQPLIPVGKALKK
GHLHLRLHGARLTGEWHLIRMKTEGKRENWLLTKAEDAASGARDPVARYRRSVISQRTMR
EIAADKPPVETQGGKRPGFAKPQLATLSDKMVAGEGWWHELKFDGYRALIALGDGGPRVF
TRNGNDWTDRFEGLLPALAETDCDSALIDGEIVAGAGLDGFSELQKAITAGGPFRFYGFD
ILSRDGEDLRKAPLSERREVLEEVMKPLPALGPAQLSPVISKDPEGAFETICKAGGEGLI
AKRIDAPYRGTRSKSWMKVKCERRDEFVILGWQESDKRGRPFASLALGTAEGDGWRYIGK
VGTGFDEDQAEALAKAMKPLARKTAPADVEASEAKGMHWITPELVAEIRYAERTGGDRLR
HAVFLGLREDKPARTVRLDNDAPSEERPNGAGIGISSPERVVFEGAGYTKLDVARYYEAM
ADRILPHLAEHPVSLLRLPEGLGGERFFQKHAGRGFPDGIANVEITESDGKTAQYMMIRT
AEGLVAAAQMGTIEFHIWGSRVDRLERPDRLVFDLDPDEGLDFAGVKDAAFEIRDLLAEL
DMPSWPLLSGGKGIHVTVPLRRSAGWDTVRLFARVFSHLLVARSPKRYTAEMSKSKRKGR
IFVDWLRNGEGATAIAPYSLRARPGAPVAMPVSWDELKKVRKANAFDLGAALERDAEIAF
PDAVSISQGRVDKLKDMLDASE
NT seq 2409 nt NT seq  +upstreamnt  +downstreamnt
atgggaagcctcgatcgttatctcgagatgcgcgacttcgcgcagacgccagagcccgat
ggcggcaccgcctcgggccatctcgcgccgcgctattcgatccagaaacacgacgcgacg
cgcacccatttcgatctgcgcctcgaatgggagggcgtgctgctgtcctgggcgatcacc
aagggaccgtctttcgatccgggtgaaaagcggctcgcggtgcggaccgaggatcacccg
ctcgactatctcaccttcgaggggacgatcccgaaggacaactatggcgcgggcacggtg
atgctgtgggatctggggcattggcagccgctgatcccggtcggcaaggcgctcaagaaa
gggcatctgcacctgcgcctgcatggcgcgcgactgacaggcgagtggcacctgatccgc
atgaaaaccgaaggcaagcgcgagaactggctgctgacgaaggcggaggacgcggccagc
ggcgcgcgcgatccagtggcgcgctatcgccgctccgttatcagccagcgcacgatgcgc
gagatcgccgccgacaagccgcccgtcgagacgcaaggcggcaaacgccctggcttcgcc
aagccgcagctggcgaccctgtcggacaagatggtcgcgggcgaggggtggtggcacgag
ctgaaattcgacggctaccgggcactgatcgcgcttggagacggcggcccgcgtgtcttc
acacgcaacggcaacgattggacggatcgcttcgaaggcctgctgcccgccttggctgag
accgattgcgacagcgccctgatcgacggcgagatcgtcgcaggcgcaggtctcgacggg
ttctcggaattgcaaaaggcgatcacggcaggcgggccgttccgcttctacggattcgat
atcctgtcgcgcgacggcgaggacctgcgcaaggcgccgctctccgaacgccgcgaagtg
ctggaggaggtgatgaagccgctccccgcgctggggcctgcgcagctctccccggtgatc
tccaaagaccccgagggtgccttcgagacgatctgcaaagcgggcggcgagggactgatc
gcaaagcgcatcgacgcaccatatcgcgggacccgctccaaatcgtggatgaaggtcaaa
tgcgagcgccgcgacgagttcgtcattctcggctggcaggaaagcgacaagcgtggccgg
cccttcgcctcgctcgcgctggggaccgccgagggcgacggctggcgctatatcggcaag
gtcggcaccggcttcgacgaggatcaggcggaggcgttggccaaggcgatgaaaccgctc
gcccgcaagaccgcgcccgctgatgtcgaggcatcggaggccaagggcatgcactggatc
actcccgaactggtagccgagattcgctatgccgagcgcaccgggggcgaccggttgcgg
catgcggtcttcctcgggctgcgcgaggacaagcccgcgcgcacggtacggctggataac
gacgcgccttccgaggagcgcccgaacggcgcggggatcgggatttcctcgcccgagcgg
gtggtattcgagggcgccggctataccaagctcgatgtcgcgcgttattacgaggcgatg
gccgatcgcatcctgccgcatcttgccgagcatccggtgtcgctgctccggctgcccgaa
ggtctgggcggcgagcgcttcttccagaaacacgcgggccggggctttcccgacgggatc
gcgaatgtcgagatcaccgagagtgacggcaagaccgcgcagtacatgatgatccgcaca
gcggaggggctggtcgcggccgcgcagatgggcacgatagagttccacatctggggcagc
cgcgtcgatcggctggagcggcccgaccggctggtcttcgacctcgaccccgacgaggga
ttggatttcgccggggtcaaagatgcggccttcgagatccgcgatctgctggccgagttg
gacatgccgagctggccgctcttgtccggcggcaagggtatccacgtgacggtgccgctc
cggcgcagtgccggatgggacacggtcaggctttttgcgcgggtcttctcgcatcttctc
gtcgcgcggtcgcccaaacgctataccgccgaaatgtcgaagtcgaagcggaaggggcga
attttcgtcgactggctgcgcaacggcgagggagcgacagcgatcgcgccctattcgctg
cgcgcacggcccggtgcgccggtcgcgatgccggtctcgtgggacgagctgaagaaagtc
cgcaaggccaacgccttcgatctgggcgcggcgctggagcgtgatgcagagatcgcgttt
cccgatgccgtctcgattagccagggtcgggtcgacaagctcaaagatatgctcgacgcc
tcggagtga

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