Thermincola potens: TherJR_1006
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Entry
TherJR_1006 CDS
T01226
Name
(GenBank) recombination helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
tjr
Thermincola potens
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_1006
Enzymes [BR:
tjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TherJR_1006
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
TherJR_1006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_12
Viral_helicase1
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADG81871
UniProt:
D5XE00
LinkDB
All DBs
Position
1033025..1036864
Genome browser
AA seq
1279 aa
AA seq
DB search
MGGTKWTNEQITAITTRNCNLLVSAAAGAGKTAVLVERIIRRIVDPIDPVDVDRLLIVTF
TKAAANEMRERIGLAIARELDNNPASLHLNRQATLLSRAYITTLHSFCLDVVRQYFYRLE
LDPAFRVADDAEAALMLMETLEDLFEELYSSGDEEFLALVDAYGGERDDSRLHQLILDVY
RFAVSNPWPEYWLDKLEAAYKPDSISSFEQQSWVQILLQWAELQLSGCLVKLKEAEKLAL
RPGGPAAYLDNLRDDMVVVHDLLAAARSWDGLHRALQDLQFGKLKACRNKDIDETLKERT
KKLREEAKKTIASLSRDLFARPLGEHVADLERTAPYVRTVAGLVRAFMERYREMKTARGL
VDFSDLEHYCLKVLLDEKSTPQKPMPSPVALELREYFAEVLVDEYQDINAVQETILHLVS
RQGEDAERPNLFMVGDVKQSIYRFRLAEPSLFMSKYLAYPRTAGEACRAVDLTQNFRSRR
EVIDAVNYIFRQIMTPRLGELIYDNKAELHCGALYADVPGGGPPAGGPVELHLLEKKVDI
GAPGGEENEQPDAIDAGDDASNSDDDPAELDATQREARLVARRIKELVSGTAERPGPQLQ
VFDKTTGGYHPVRYRDIVILMRATRGAANIFVEELRGAGIPVYADLDTGYFAATEIEIVM
SLLKIIDNPRQDIPLAAVLRSPIVGLTAEELALVRLCAPSRNSRFYDAVQAAAADGPVPE
PVKTRLQAFLTSLEQWRTMARQGSLAGLVWRLYNETGYYTYVGGMPGGMQRQANLRALYD
RARQYEATAYRGLFRFLRFIERFQDLGNDLGTARALGENEDVVRIMSIHKSKGLEFPVVI
VAGLGKQFNTVDLRQNVVLHKELGIGLPVVEPELPLTYPSLVQSAIRKKNQMEMLAEEMR
VLYVALTRAREKLILIGSAAELEKCAAQWCQNVLHKEWPLPDVSLAGAKSFLDWICPAVA
RHREGQAIRDLAGCDEAPAGEPAEDRSLWSVRVWRPGECLVPQPEEPADYEELLEKVRKM
EPVDITAGQTKVISEALSWKYPFALTAGKPSKAAVTEIKNSFAGMEMEETHGSHPAGELA
VLRKFNFIRPRFYQNQKGLTAAERGSAVHLVMQHVDLRGDLTEQGIAGQLARMQARELLT
AEQAKAINPKDIAGFFNSEIGRRMLRADEIYRELPFTVTLPAEVIYSDLPAGCGEAVLVQ
GVIDCLLKEGDGFVLLDYKTDRLPVEKNSLPAGDVLQVLADKYRGQLNIYAMAVERILRK
PVQAKYIYLFAVGKTVEIV
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
ttgggtggtacaaaatggaccaatgaacagataactgctattaccacgcggaactgcaac
ctgttggtttcggcagcggcgggggccggaaaaacggcagtactggtagagagaatcatc
aggcggatagtggacccgatagaccctgttgatgtggaccgcctgttgatagtcactttc
actaaggcggccgccaatgaaatgcgggaaagaatcggcctggctattgcgcgggaatta
gacaacaaccctgcatcgctccacctgaacaggcaggcgaccctgttgagcagggcctat
atcactactctccattccttttgcctggatgtggtaaggcagtatttttaccgtttggaa
ctggaccctgccttccgggtcgctgacgatgcagaagcggccctcatgctgatggaaacg
ctggaagaccttttcgaagaactctacagcagcggggatgaagagtttttggctttagtg
gatgcctatgggggagaacgggatgactccaggctgcaccagttaattttggatgtttac
aggtttgctgttagcaacccctggccggaatattggctggacaaactggaagctgcttac
aaacccgattctattagttccttcgagcaacagtcttgggtgcagattctgctgcagtgg
gcagaactccagctttccgggtgcctggtcaaactcaaagaggcggaaaagctggccctc
aggcccggtgggccggcggcatatctggacaacctgcgggatgacatggtggttgtccac
gacctgctggctgccgcccgttcatgggacggtctgcaccgggccttacaggatctacag
tttggcaagctgaaggcctgccggaataaggacatcgacgagacccttaaggaaagaaca
aagaagctgcgggaagaagcaaaaaagactattgcttccctgagcagggatttgtttgcc
cggccgcttggcgagcacgtggcagacctggaaaggaccgcgccttatgtcagaaccgtt
gccgggctggtaagagcttttatggagcggtacagggagatgaagactgcccgcgggttg
gtagatttctctgatttggaacactactgtctaaaggtattgctggacgaaaaatcaacg
ccccagaaaccaatgccatccccagttgctcttgagctcagggaatactttgcggaagtg
ctggtggacgagtaccaggacataaatgccgttcaggaaaccattttgcacctggtatca
aggcagggcgaagacgccgaaaggccaaacctgttcatggtgggagatgtcaagcaaagt
atataccgtttccgtttggcggaaccttccctgtttatgagcaagtacctggcttatccc
cgtacggcgggagaggcctgccgggctgtcgacctgacccaaaacttccgcagccgccgg
gaagtgattgacgcggtaaactatattttccgccagatcatgacaccgcggctgggagaa
ctgatatatgataacaaagctgaattgcattgtggcgctctttatgccgatgtccccgga
gggggaccccctgccggaggcccggttgaactccatttattggagaagaaggtggatata
ggcgcgcccggcggcgaagaaaatgaacaaccggatgcgatcgatgcgggggatgatgcc
agtaatagcgatgatgacccggcagaactggatgctacccaacgggaagcccgcctggtt
gccagaaggattaaagaactggttagcggtacagcggaaaggcctgggccccagctgcag
gtttttgataaaaccacaggcggttatcaccctgtcaggtaccgggatattgtcattctt
atgagggccacccggggagccgccaatatatttgtggaagagctgcggggcgccggtata
cctgtttatgcggacctggatacggggtactttgctgctactgaaattgaaattgtcatg
tccctgttaaagataatagataacccccgccaggatataccgctggctgctgtgctgagg
tcgcctattgtaggtcttaccgcggaagaattggcccttgtccggctctgcgccccttcc
cgaaacagccggttttatgatgctgtacaggctgcggcagcagacggccctgtgcctgaa
cctgtcaaaactaggttgcaggcctttctaacctccctcgagcagtggcgtaccatggcc
cggcagggttcactggcagggttggtctggcgcctgtacaatgaaaccggttattacacc
tacgttggtggaatgccaggcggcatgcagcggcaggccaacttgcgggccttatatgac
cgggcgcggcaatatgaggccactgcctaccggggcctgtttcgtttcctgcgatttatc
gagcggtttcaggacctgggtaacgatttgggaacagccagggcattgggtgaaaacgaa
gatgtggtaaggataatgagtatccacaagagcaaaggcctggagtttcctgtggttatc
gtggccggcctgggcaagcagtttaataccgttgacctgaggcaaaatgtggtcctgcat
aaagaactgggcatcgggctgcctgtcgtggagccggagttgcctcttacctatccgtca
ctggtacagtccgccatcaggaaaaagaaccagatggaaatgctggcggaagaaatgcgc
gttttgtatgtggccctcaccagggccagggagaaactgattctgattgggtcagcggcg
gaactggaaaaatgcgcggcccaatggtgccaaaatgtgctacataaggagtggcctctc
cccgatgttagcctggcaggcgctaagagttttctggactggatctgccctgccgtggcc
cggcacagggaaggacaggccatcagggacctggccgggtgtgatgaggcgcctgccgga
gagccggcggaagacaggtccctttggagtgtgcgtgtttggcggccgggagaatgtctt
gtaccacagcctgaagagcccgccgattacgaagaactgttggaaaaggtcaggaaaatg
gaacccgtggatattaccgccgggcagacaaaggttatcagcgaagccctgagctggaag
tatccttttgctcttacggcgggtaaaccttccaaggcggctgtaacagaaataaaaaac
tctttcgcagggatggagatggaggaaacgcacggcagccatcctgccggggaattagca
gttttgcgcaaatttaatttcatcaggcccaggttttatcaaaatcagaagggtctgacg
gctgccgaacggggttcggctgtgcatctggtgatgcagcatgtagacctcaggggggat
ttgacggaacaaggcattgccggacaactggcccgcatgcaggcccgggaattgcttacc
gcggagcaggccaaggcgatcaacccaaaagatatagcgggtttctttaattcggaaatc
gggcgccgcatgctacgggcggatgaaatataccgggaactcccctttactgtcacactg
ccggcagaagttatctacagcgacctgcctgccggttgcggggaagcggtacttgtgcag
ggggtgattgactgcctgctgaaagagggcgacggttttgttttactggattataaaaca
gaccggctcccggtggagaaaaacagccttcctgcgggagatgtccttcaggtattggct
gataagtacaggggccagttaaatatttatgccatggctgttgaacgtatattgcgaaaa
ccggttcaggccaaatacatatatctgtttgcggtgggaaagacagtagaaattgtttga
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