Thermosipho melanesiensis: Tmel_1513
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Entry
Tmel_1513 CDS
T00550
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tmel_1513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tme03019
]
Tmel_1513
03016 Transfer RNA biogenesis [BR:
tme03016
]
Tmel_1513
Enzymes [BR:
tme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Tmel_1513
Messenger RNA biogenesis [BR:
tme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tmel_1513
Transfer RNA biogenesis [BR:
tme03016
]
Prokaryotic type
tRNA degradation factors
Tmel_1513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Symplekin_C
Stork_head
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ABR31358
UniProt:
A6LN57
LinkDB
All DBs
Position
complement(1499049..1501163)
Genome browser
AA seq
704 aa
AA seq
DB search
MITKKKVLNFINSKNYKPMIQKELYKSLGLKTKKEKKELRKILTELIKEEKIYKDGKGRY
RPITKNHIVGTIEFTRNGTIAFVWTSSGEEIAVPVEKAGNAIHKDKVIVEIEGKWYDIPE
GRVIKIIEHGLKKIVGTFQPVRKAAFLIPDDPKIQYDFYVPIEFFNNAKPGQKVVGKIIK
YPTPTKNPVAKVVEVLGYADDPATDFPTVIVKHDINLSFPDDVMKEAANIPEKVLPKELK
KRKDFRDELIVTIDGSDAKDFDDAVSVKKLKNGNYLLGVHIADVSHYVKEGSALDKEAFF
RGTSIYLIDRVIPMLPFKLSHGICSLVQGEDRLVMSLIMEINKEGKVINYEVTPGIIRSK
RRLVYDDVNDLFEGKKEAIEKIGDLKDTLLLMKELKNILRNARKKRGAILDIEGGEVKII
LDEKGHAIDIIPRKRGETETIIEEFMIKANETIAEIFHKYNLPFVYRIHEKPEPDTIIQL
KNYLSAIGIDFKVPQKITSRILQELLEKTSNHPLRDSIEKLLVRSMKRAVYSSTNIGHFG
LASYAYTHFTSPIRRYPDLIVHRLIKKFLSKKDKLSKKQKKLLNDKLAKIAAYSSKRERV
ADEAEWDYVALKKIDYISNHIGETFDVVITSVTKFGLFVEIIEKNISGLIHISTLDDYYL
YDEEKSILVGKRNGKIYKIGDKLKAKVVNANKTRMQIDFEISEA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgattactaagaaaaaagtattaaattttattaattcaaaaaattacaaaccaatgatt
caaaaagagctttacaaatctttaggactaaagacaaaaaaagaaaaaaaagaattaaga
aaaatactaactgaattaattaaagaggaaaaaatatataaagacggcaaaggaagatat
agaccaattacaaaaaatcacatcgttggaacaattgaatttacaagaaatggtaccata
gcatttgtttggacaagctctggtgaagaaatagcagtccctgtagaaaaagcaggaaat
gcaatccacaaagataaagtaatagttgaaatagaaggaaaatggtacgatatacctgaa
ggaagagtaataaaaataatcgaacatggtctaaaaaagattgtaggaacattccaacct
gttagaaaagctgctttcttaattcctgatgatccaaaaattcaatatgatttttacgta
ccaatagagttttttaacaatgcaaaacccggtcaaaaagttgtaggaaaaatcattaaa
taccctacaccaacaaaaaatcccgtagcaaaagttgtagaagttttaggatatgcagat
gatccagcaactgattttccaacggtaatagtaaaacatgacataaacctctcattccct
gatgatgttatgaaagaagctgcaaatattccagaaaaggttcttccaaaagaattgaaa
aaaagaaaagacttcagagatgagttaattgtaacaattgatggatctgatgcaaaagat
tttgacgatgcagtaagtgtaaaaaaattaaaaaatgggaattacttactcggcgtacat
attgcagatgtttcacattatgtaaaagaaggaagtgctttggataaagaagcctttttt
cgaggaaccagcatatacctaatcgacagagttattccaatgcttccttttaagctttca
catggtatctgtagtctagtacaaggagaagacagactagttatgtcattgataatggaa
ataaacaaggaaggaaaagtgataaactacgaagttacgcctgggataattagaagtaaa
agacgacttgtctatgatgacgtaaatgacttatttgaaggaaaaaaagaagctattgaa
aaaattggagatttaaaagacacattattgttaatgaaagaattaaaaaatatactcaga
aatgcacgaaaaaaaagaggtgcaattttagatattgagggaggagaagtaaaaataatc
cttgacgaaaaaggacatgctattgacattattccaagaaaaaggggagaaaccgaaaca
ataatagaagaatttatgataaaagcaaatgaaaccatagccgaaattttccataaatat
aacctacctttcgtatatagaatacacgaaaaacctgaaccagatacaatcattcaactt
aaaaactatctatcagccattggcattgactttaaagttccacagaaaataacttcaaga
attttacaagaattattagaaaaaactagtaatcatccattgagagatagtattgaaaaa
ttacttgtgagatccatgaaaagagctgtatattcgtccacaaatataggacattttggc
ctagcttcatacgcatatacacactttacctctcctattaggagatatcctgatcttatt
gtgcacagactaattaaaaaattcttatctaaaaaagacaaattaagcaaaaaacaaaaa
aaactactaaatgacaagttagctaaaattgctgcttattcaagtaaaagagagagggta
gcagatgaagcagaatgggattatgtagccttaaaaaagatagactatatatctaaccac
attggtgaaacattcgatgtagtaataacgtcagtaacaaaattcggattatttgtcgaa
ataattgaaaaaaatatttctggattaattcatatatctacgctagatgactattacttg
tatgacgaagaaaaaagtattttggttggcaaaagaaatggaaaaatatacaaaatagga
gataagttaaaagcgaaggttgtaaatgcaaataaaacaagaatgcagatagatttcgaa
ataagtgaggcttaa
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