Thermocaproicibacter melissae: NOG13_09420
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Entry
NOG13_09420 CDS
T09029
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NOG13_09420 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmel03400
]
NOG13_09420 (ligD)
Enzymes [BR:
tmel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NOG13_09420 (ligD)
DNA repair and recombination proteins [BR:
tmel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NOG13_09420 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Lipase
Motif
Other DBs
NCBI-ProteinID:
WBY65092
LinkDB
All DBs
Position
pTVN:12588..15029
Genome browser
AA seq
813 aa
AA seq
DB search
MAEKLEEYIRKRNFERTGEPGNQPEESGENLKFVVQHHLARSDHFDFRLEWDGVLLSWAV
PKGPSYNPRDKRLAVQVENHPLEYRNFEGTIPKGEYGGGTVMIWDEGIWSPQVDVDEGLR
LGSLKFVLHGRRLKGKWALVRMKAKDEKEKNNWLLLKEKDEYVQSSDGISDFTTSVRTGR
TMEEIEAGTAEKFTHNPFQKTEVQLAKMVNKVPEGNDWLYEVKYDGYRILAYLEGNRVRL
MTRNGNDYTERFPEVASSLIDLAAGRAMVLDGEMTVTDDNGRTDFQALQNYMRHPTGKNL
TYIVFDLLALDGEDFRQHPLIERKKALETLMEGAPKNLHYSQHIAGRGEECFQAARQANL
EGIVGKKEDSVYSGTRNGDWIKLKCEKRQEFVIGGYTQTDKKESGISSLLLGVYEGDNLI
YVGRAGTGLSARSMAELESKFAGIKSEASPFMNPPRVRSNEKITWLEPKLAAEIKFAEWT
SEGLLRQASFKGLRTDKDPKTIRKETPNDDSFHESAESREKSMEDEQSELVVEGVKITHP
DKILFENPDITKADVVQYYEQVASRMLPYVSNRLLSIVRCPKGISQACFFKKHPGPGSQG
VVTLKVPNSNGEEEEYFYIKDISGLISEAQMGTLEFHTWGSRVDSLEKPDIMVFDLDPDE
GMDLGQVRQGVKDVKSIIDQLSLTSFLKTSGGKGYHVVVPFRPSADWERFHDFAKQIAEV
MEQKWPDRYTSNIRKEKRKNRIFIDWIRNARGATSIAPYSIRARKGARVSMPIGWDELDT
VAPDGITMTEALKRIKNGKDPWDGFFQIDQQLK
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaaacttgaggagtatattcgaaaacgcaactttgaacgcaccggcgaaccg
gggaatcagcccgaggaaagcggagagaatctaaaattcgttgtccagcatcacctcgca
cgcagcgatcattttgactttcgcctagaatgggacggcgtccttttaagttgggcggta
ccgaaaggtccttcctacaatcctcgcgacaaaagacttgccgtgcaggtggaaaatcat
ccgctggaatatcggaattttgagggaacgattccaaagggtgaatacggcggtggaacc
gtcatgatctgggatgaaggcatctggagccctcaggtagatgttgacgaagggcttcgc
ctaggttctctcaaatttgttctgcacggcagacgcctgaaaggaaaatgggcgctcgtg
aggatgaaagcaaaagatgagaaagagaaaaacaattggcttttgcttaaggaaaaggat
gaatatgtccaatcttccgatggaatttctgatttcacaacaagtgtccgcacgggccgc
acaatggaagaaatcgaagcgggaacagcagagaaattcacccataatcccttccaaaag
accgaagtgcagcttgcaaaaatggtcaacaaagtgccggaaggcaatgactggctgtat
gaagtcaaatacgacggataccggattttggcatatctcgaaggcaaccgcgttcgcctt
atgacccgaaacggaaatgattacacggaacggtttccggaagtagccagctcgctgatt
gatttagccgcaggaagggcaatggttctggacggcgagatgacagttacggatgacaac
ggcagaacggatttccaagcactgcaaaactatatgcggcatccgacggggaaaaattta
acttatattgtttttgaccttttggcgcttgacggggaagatttcagacagcaccctcta
attgaacgaaaaaaagcgctggaaactcttatggagggcgctccgaaaaatctccattac
agtcagcatattgcaggcagaggcgaagaatgttttcaggcggctcgccaagcgaacctg
gaaggaatcgttgggaaaaaggaggactccgtttacagcggtacgcgaaacggcgactgg
ataaaattaaaatgcgaaaagcggcaggaatttgtcatcggcggatacacgcaaaccgat
aaaaaagaaagcgggataagttccctgctgctcggcgtatacgaaggagacaacctaatc
tatgtcgggcgtgccggaaccggtctcagcgcccgaagcatggcagagcttgaaagcaaa
tttgccggaataaaaagcgaagcaagtccttttatgaaccctccgcgggtacgctcaaat
gaaaaaatcacttggctggagccaaagctggctgcggaaattaaatttgcggaatggaca
agcgaagggctgctgcgtcaagccagcttcaagggccttcgtacggataaagacccgaaa
acgatacgaaaagaaacaccgaacgacgactcttttcacgaatccgctgaaagcagggaa
aaatcaatggaagacgagcaaagcgaactggtcgtagagggtgtcaaaataacccatccg
gataaaatcttgtttgaaaatcccgacatcacaaaagctgatgtggttcagtattacgag
caggttgcatcccgcatgcttccctatgtatcgaaccggctgctaagcatcgtgcgctgc
ccaaagggaatctcgcaggcctgttttttcaaaaaacatcccgggccgggcagtcagggt
gttgtaacgttgaaggtaccaaacagcaacggtgaagaggaagagtacttttatataaag
gatatttccggtttaatttcggaagcgcagatgggtacgctcgaatttcacacctggggc
agccgtgtagacagccttgaaaaaccggacatcatggttttcgacctcgacccggacgag
gggatggaccttgggcaggttcggcaaggagtgaaggatgtgaaaagcattatcgaccaa
ctctccctcacttcgtttctgaaaacaagtggcggcaaggggtatcatgtggtcgttcct
tttcggccgtcggccgactgggagcgctttcacgactttgcaaaacaaattgccgaagta
atggagcagaaatggcctgaccggtacacaagcaatatccggaaggaaaagcggaaaaac
agaatcttcatcgactggattcgaaacgccagaggggccacgagcatcgctccatattca
attcgagcgagaaaaggcgccagagtttccatgccaatcggctgggatgagttagacact
gtggcgccggatggcattacgatgacggaagccctgaaaagaatcaaaaacggcaaagat
ccttgggatggcttcttccagatagaccagcagttaaaatga
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