Thermotoga maritima MSB8: THEMA_04885
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Entry
THEMA_04885 CDS
T02976
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tmi
Thermotoga maritima MSB8
Pathway
tmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THEMA_04885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmi03019
]
THEMA_04885
Messenger RNA biogenesis [BR:
tmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THEMA_04885
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
Lectin_N
KhpA-B_KH
Spore_YhcN_YlaJ
Cas3_HD
Motif
Other DBs
NCBI-ProteinID:
AHD18246
LinkDB
All DBs
Position
964769..966295
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AA seq
508 aa
AA seq
DB search
MMLWYIVAGAGGLLIGYLIANYQINQKLRKAKEDAQTIIEKAEKEANEIKKKAIIEGREE
VHRLREEFEKERSRREEELRALEERLLKREELLTRKEENLEKREQQVEELKANLEEKMRE
VEEKEKRIDEELKRLAGMTVEEARELILEEARQRYEHDLAKLYKEMKEQVEEEAEKEAKK
VIAFAVQRYAPDYVGEITVSTVSLPSDDMKGRIIGREGRNIRTFEKITGVDLIIDDTPEV
VVLSCFNPLRREIARITLEKLVADGRIHPARIEEMYEKAKQEVEKAIKEAGQEATFKAGV
MGLHPELVKLLGKLKYRTSYGQNVLNHSIEVALLAGYMASELGLNADKARRGGLLHDIGK
AVDQELEGSHTTIGAELARRYGEKEDIINMILSHHGEEEPMTPEAVLVAAADALSAARPG
ARRESLENYIKRLMKLEEIAKSFKYVEKAYAIQAGREIRVIVEPDKVDDALAEKLAYDIS
KKIEEELEYPGVLKVVVIREKRSVAYAK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtggtacatagtagcaggagccggtggtcttctgattggatatttaatagca
aactatcagataaatcaaaagctcagaaaagcgaaagaagacgctcaaaccatcattgaa
aaggcggagaaagaagcaaacgagataaaaaagaaagcgataatagaaggaagagaggaa
gttcacaggctcagagaagaattcgaaaaagagcgatccagaagagaagaggaattgaga
gcattagaagaaagactcttgaaaagagaagagctcctgacaagaaaagaagagaacctt
gagaaaagggaacagcaggttgaagaactcaaagcaaatctggaagagaaaatgagagag
gtcgaagaaaaggaaaaaagaatcgacgaagaattgaaacgccttgccggtatgactgta
gaagaggcaagagaactcatcctcgaagaagcaaggcagaggtacgaacacgaccttgcg
aaactctacaaagagatgaaagaacaggttgaagaagaagctgagaaggaagccaagaaa
gtcatagcattcgctgttcagagatacgcaccggattatgtaggagaaatcaccgtttct
accgtttctctaccgtcggatgacatgaagggaagaatcataggtagagaaggaagaaac
atcaggacatttgaaaagatcacgggtgtggacttgataatagacgacaccccggaagtg
gtggttctttcctgctttaaccctctgagaagagagatagcccgtatcactctggaaaaa
ctggtggcggatggaagaatacatcctgcaaggatcgaagaaatgtacgaaaaagcaaag
caggaagtggagaaagccataaaagaagctggacaggaggcgacgttcaaagcgggtgtt
atggggctccatccggagcttgtgaaactccttggaaaattgaaatacagaacgagctat
ggccaaaacgttctgaaccattcgatagaagtggctctgctcgccggttacatggcttct
gaacttgggctaaacgcggacaaagcgagaagaggaggactcctccacgatataggaaaa
gctgttgatcaggagctggaaggttcacacacgaccataggtgcagagcttgcccgaaga
tacggagaaaaagaagacatcataaacatgattctcagccatcacggagaagaagaaccc
atgacacctgaagcagtactcgtggcagctgctgatgctctctccgcggcaagaccaggt
gcgagaagagagagtctggagaactacatcaagcgtcttatgaagctggaggagatagca
aaaagcttcaagtacgttgaaaaggcctacgccattcaggctggaagagaaattagagtg
attgtggaacccgacaaagtggatgacgctctcgctgaaaaactcgcctacgatatttct
aaaaagatagaagaagagctcgagtatcctggtgttctgaaagttgtggtgataagagag
aaaagaagcgtcgcttacgcgaagtaa
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