KEGG   Tistrella mobilis: TMO_a0311Help
Entry
TMO_a0311         CDS       T02128                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tmo  Tistrella mobilis
Pathway
tmo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tmo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TMO_a0311
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tmo03400]
    TMO_a0311
Enzymes [BR:tmo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TMO_a0311
DNA repair and recombination proteins [BR:tmo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TMO_a0311
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AFK55714
UniProt: I3TSH6
LinkDB All DBs
Position
pTM1:complement(341301..343739)
Genome map
AA seq 812 aa AA seqDB search
MAADPLDSYRRKRRFDRTPEPEARSGRTPEGGRLTYAIQKHDARRLHYDLRLEWAGVLKS
WAITRGPSLDPRQKRLAVRTEDHPLAYAGFEGQIPAGQYGAGEVVLWDRGHWEPVGDAED
GLAAGRLDFILHGERLRGRFVLVRMKPAAKAGRAPEKAENWLLIKRDDADADPTGEVTRR
HPGSVAVQPKREAAPLPGFVAPMLATLTDRPPRGPGWVFEIKLDGYRALAAVSGGRAVIR
TRSGLDWTDRFPGIARALAARPGLDGVLLDGEMTAMTADGRTDFSALQAALSAGGEGLHY
GVFDLLAAGGESLRHLPWTTRRARLRALLGAPAGDGIHLVDHSPGPAGDLLDQVCAAGHE
GLIAKRTDAPYRPGRGHAWLKVKCSQAGEYVVVGTSPSEAGRPFASLLLAVQDRGTCRYA
GRVGAGFSDRDFAWLAPRLTALARRTPPVDRDSLPPAVARAARWVEPRIVVQIAHGGLTG
EGLIRQGRYLGPREDKPAAEVEADRVMAVEEAEAMDETGDSLRGVRLTHPDRVLFPEQGI
TKRDLARWFDAVAGLMMPHLENRLVSLVRCPEGRRKACFFQRHAGRGLPRGFASRKLTDS
LGSTEEYVLVRDPEGLVGAAQIGVLELHLWGSRIDRPQRPDRLVFDLDPDPAVGFEAVRQ
AAFDMRDALAALDLASVPLLTGGKGVHVVVPITRRHDWPVVKAAAKALAQRFADHDPGRF
VATMSKAKRRGRIFIDHFRNDRTATAICPWSPRARAGAPVARPVDWQMLAGIDRADAFRL
GDPLPATDPWAGLVPPRQGLTAAALRALGVAE
NT seq 2439 nt NT seq  +upstreamnt  +downstreamnt
atggccgccgacccgctcgacagctatcgccgcaagcgtcgcttcgaccgcacgcccgag
ccggaggccaggagcgggcgcacccctgaaggcggcaggctgacctatgccatccagaag
cacgacgcccggcggctgcattacgatctccggctggaatgggccggggtgctgaaaagc
tgggcgatcacccgcggccccagcctggaccccaggcagaaacggctggcggtgcgcacc
gaagaccaccccctcgcctatgccggtttcgaagggcagatccccgcgggccagtacggc
gccggcgaagtggtgctgtgggatcgcggccattgggagccggtgggtgatgccgaggac
gggctcgccgccggccggctggacttcatcctccatggcgagcggctgcgcggccgtttc
gtgctggtgcgcatgaaaccggcggccaaggccggacgggcgccggaaaaggccgagaac
tggctgctgatcaagcgcgacgacgccgatgccgacccgacgggcgaggtgacccgccgc
caccccggcagcgtggcggttcagccgaagcgcgaggccgcccccctgcccggcttcgtg
gcgccgatgctcgccaccctgaccgaccggccgccgcgcgggcccggctgggtgttcgaa
atcaagctcgacggctatcgcgccctcgccgcggtgtcgggcggccgggccgtcatccgc
acccgatcgggcctcgactggaccgaccgcttccccggcatcgcccgggcgctggcggca
cggccgggcctggacggcgtgctgctggacggcgagatgacggcgatgacggcagacggc
cgcaccgatttctccgccctgcaggcggcgctctccgccgggggcgaggggctgcattac
ggcgtcttcgacctgctggcggcgggcggggaaagcctgcgccacctgccctggaccacc
cgcagggcccggctcagggcgctgctgggggcgcctgcgggcgacggcatccaccttgtc
gatcacagccccggcccggcgggggacctgctggaccaggtctgcgcggcgggccatgag
gggctgatcgccaagcggaccgatgcgccctatcgcccgggccgcggccatgcctggctc
aaggtcaaatgcagtcaggcgggggagtatgtcgtggtcggcacctcgccctccgaagcc
gggcggcccttcgcctcgctgctgctggcggttcaggatcgcggcacctgccgctatgcc
ggccgggtgggcgccggtttcagcgacagggatttcgcctggctggcaccgcggctgacg
gcgctggcccgcaggaccccgccggtcgaccgcgacagcttgccgcccgccgtggcccgg
gcggcgcgctgggtggagccgcggatcgtggtccagatcgcccatggcggcctgaccggc
gaggggctgatccgccagggccgctatctgggcccgcgcgaggacaagccggcggccgaa
gttgaggcggaccgggtgatggccgtcgaggaggcagaagcgatggacgagaccggtgac
agcctgcgcggcgtgcgcctgacccatcccgaccgggtcctgttccccgaacagggcatc
accaagcgcgatctcgcccgctggttcgatgccgtggccgggctgatgatgccgcatctg
gagaaccggctggtcagccttgtgcgctgccccgagggccgccgcaaggcctgtttcttt
cagcgccatgccggccgcggtctgccccggggtttcgccagccgtaaactgaccgatagc
ctgggcagtaccgaagagtatgttctggtccgcgatccggaaggtctggtgggtgcggca
cagatcggggttctggagctgcatctctggggatcgcgcatcgaccggccccagcgcccg
gaccggctggtcttcgatctggacccggatccggcggtagggttcgaagccgtgcgccag
gcggctttcgacatgcgcgacgcgcttgccgccctcgacctcgcctcggtgccgctgctg
accggcggcaagggcgtgcatgtggtggtgccgatcacccgccggcacgactggccggtg
gtgaaggcggcagcgaaggccctggcgcagcgcttcgccgaccacgatcccggccgcttc
gtcgcgaccatgagcaaggcaaagcgcaggggccggatcttcatcgaccatttccgcaac
gaccgcaccgccaccgccatctgcccctggtcgccccgcgcccgggccggcgccccggtg
gcccggccggtcgactggcagatgctggccgggatcgaccgggccgacgccttccgtctg
ggcgacccgctgcccgcaaccgacccctgggccgggctggtgccgccccgccaggggctg
acggcggcggcgctcagggcattgggtgtggcagaatag

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