Tremella mesenterica: TREMEDRAFT_67478
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Entry
TREMEDRAFT_67478 CDS
T03139
Name
(RefSeq) hypothetical protein
KO
K07466
replication factor A1
Organism
tms
Tremella mesenterica
Pathway
tms03030
DNA replication
tms03420
Nucleotide excision repair
tms03430
Mismatch repair
tms03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TREMEDRAFT_67478
03420 Nucleotide excision repair
TREMEDRAFT_67478
03430 Mismatch repair
TREMEDRAFT_67478
03440 Homologous recombination
TREMEDRAFT_67478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tms03000
]
TREMEDRAFT_67478
03032 DNA replication proteins [BR:
tms03032
]
TREMEDRAFT_67478
03400 DNA repair and recombination proteins [BR:
tms03400
]
TREMEDRAFT_67478
Transcription factors [BR:
tms03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
TREMEDRAFT_67478
DNA replication proteins [BR:
tms03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
TREMEDRAFT_67478
DNA repair and recombination proteins [BR:
tms03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
TREMEDRAFT_67478
MMR (mismatch excision repair)
TREMEDRAFT_67478
DSBR (double strand breaks repair)
HR (homologous recombination)
TREMEDRAFT_67478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
HROB
DUF5521
DUF3785
DUF3999
Motif
Other DBs
NCBI-GeneID:
18497838
NCBI-ProteinID:
XP_007001973
JGI:
Treme1_67478
LinkDB
All DBs
Position
Unknown
AA seq
596 aa
AA seq
DB search
MASPLTQDFCRLVHSSDELPESVITSEPILQAVSVKKINAPGASGLDRYRVILSDGTHFL
QGMLATQLNPMVDSKELDKNTVIKLKTFVTNVVQGRKLIIILTLEVVPWSGEKIGNPTNV
EQAAPLAAPQSVLKPSTTANVNASKPVAKQPQKTAAAPMGPLYPIEGLSPYQNKWTIKAR
VTQKSDLKHWSNQRGEGKLFSVTFMDDTGEIRATGFNETVDQFYDLLQEGKVYFVSRARI
NIAKKQFNNVNNEYEITFENSTEIQPCDDESVPQIKYNFKSVGDLGDLQKDELCDVIGVV
KEVGELGSVTSKATNKPFAKRDIQLVDQSGQSVRLTLWGKQAETFQADDEPVIAFKGVKV
GDFGGRSLSMFSSATMALNPDIPEAHSLRGWYDAEGRSKHFQAYTSATVSNSDGQITKPS
EIKTIGQAKDEQLGMSDKTDYFTTQATVSFIKSETFSYPACANPDGCNKKVTDEGSGWRC
EKCDKTWPSPIHRYILSMNVMDYAGSFWITAFNEVAEQIMGISANELMEMRDNGNDVEFQ
RSFQKASGRTYNFQMMAKQDSFNDQPRVRYQCRRAALPDYPADSAHLVSLINSISV
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggccagccctttgacccaagatttctgtcgtcttgtacacagttctgatgagctcccg
gaaagtgtcatcacctcggaacccattctccaagctgtatcagtcaagaagatcaacgct
cctggtgcttctggtttggatcgttacagggtcattttatccgatggcacacacttctta
caaggcatgctagctacccagctcaatcctatggtagatagtaaagagttggacaagaat
accgttatcaaactcaaaactttcgtcactaatgtggttcaaggccggaaactcatcatc
atccttactcttgaagtcgtaccgtggtcaggggagaaaattgggaatccgaccaatgtt
gaacaagccgcacctcttgccgcccctcagtctgtgttgaaaccgagtactacggccaat
gtcaatgcttcaaagccggtggctaagcaaccgcaaaagaccgcagcggcacccatgggt
ccgttgtatcctatcgaagggttgagtccatatcagaataaatggacaatcaaagctcgt
gtaacgcaaaaatctgatctcaagcattggtcaaatcaaagaggagaagggaaacttttt
tcagtgacattcatggatgatacaggcgaaatccgtgctactggtttcaacgagactgtt
gatcaattttatgatttgttgcaagaaggaaaagtttatttcgtttcaagagcaaggatc
aatatcgcaaagaaacaattcaacaatgtcaataacgaatatgaaatcacatttgagaat
agtacagagattcaaccgtgcgacgacgaaagtgtccctcagatcaaatacaacttcaaa
tctgtcggtgatcttggtgatctacaaaaagatgagctatgcgatgtcatcggagtggtt
aaagaagtcggagaactcggatctgtcacttcgaaagctaccaacaaacctttcgccaaa
agagatattcaactcgtcgaccaatcgggtcaaagtgttcgcttgacattatgggggaaa
caagcagaaacttttcaagcagatgatgaacctgtcatcgcattcaaaggtgtcaaagtt
ggagatttcggtggtcgttcactttcaatgttctcatcagcgacaatggcgcttaatcct
gatataccagaagctcattctcttcgtggttggtacgatgcagaaggtcgtagtaaacat
ttccaagcttacacttccgcaactgtaagtaactcagatggacaaatcaccaaacctagt
gaaatcaaaactataggtcaagcaaaggatgaacaattaggaatgagtgataagacggat
tatttcacaactcaagctactgtcagttttataaaaagtgaaacttttagttatcctgct
tgtgcaaatcctgatggatgtaataagaaagtaacggatgaaggtagtggatggcgttgt
gagaaatgtgacaaaacttggccttcacccattcataggtatattttatcgatgaacgtc
atggattatgcaggatcgttttggatcactgctttcaatgaggtagcagagcagatcatg
gggatatcagccaatgaattgatggagatgcgagacaatgggaatgatgttgaatttcaa
cgatctttccaaaaggctagtggtagaacgtataacttccagatgatggcgaaacaagat
tctttcaatgaccaacctagagttcgatatcaatgtcgtcgtgctgctttaccagattat
ccagccgatagcgctcatctcgtttctcttatcaattccatttccgtgtag
DBGET
integrated database retrieval system
