Trichechus manatus latirostris (Florida manatee): 101344562
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Entry
101344562 CDS
T05135
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03020
RNA polymerase
tmu03420
Nucleotide excision repair
tmu05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101344562
09124 Replication and repair
03420 Nucleotide excision repair
101344562
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
101344562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmu03021
]
101344562
03400 DNA repair and recombination proteins [BR:
tmu03400
]
101344562
Enzymes [BR:
tmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101344562
Transcription machinery [BR:
tmu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
101344562
DNA repair and recombination proteins [BR:
tmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
101344562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
101344562
NCBI-ProteinID:
XP_004382934
UniProt:
A0A2Y9DXI2
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcagtatgatgaggatgatgatgaaatcaccccggat
ttgtggcaagaagcatgctggattgtaatcagttcctattttgacgagaaaggcttggtc
agacaacagctggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaggctgaagctcagcatgctagtggagaagttgaagaa
ccgccaagatatttgctgaagtttgaacaaatttacctctccaagcctacccattgggaa
agagatggtgctccttcaccaatgatgccaaatgaagccagattaagaaatctgacgtat
tctgctccactttatgttgatataacaaagacagttattaaagaaggtgaagaacaactt
cagactcaacatcagaaaacctttataggaaaaattccaattatgttacgttcaacttat
tgcctgttaaatggcttaacagatcgtgatctttgtgagttaaatgaatgccccttggat
cctggtggctatttcattattaatggatctgaaaaggttctgattgctcaagagaaaatg
gcaacaaacacagtttatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtctggagaattcttcccggcccaccagtactatatgggttagcatgctg
gcgagaggaggacagggtgcaaaaaagagtgcaattggtcagcgcattgtggcaactcta
ccatatatcaagcaggaagttcccatcattattgtattcagagcattaggttttgtgtct
gacagagatattttagagcatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccttctcttgatgaagcttttgttatccaagaacagaacgttgcactaaatttc
attggctcgagaggggcaaagcctggtgttactaaagagaaaagaattaaatatgcaaaa
gaggtcttacagaaagaaatgctcccgcatgttggcgtcagtgacttttgtgagaccaaa
aaagcctatttcttggggtatatggttcatagattacttctagcagccttgggtagaaga
gaactagatgacagagatcactatggaaacaaaagattggatcttgctgggccactactt
gctttcttatttagaggtatgtttaagaatttgcttaaagaagtgcggatctatgcacag
aagtttattgatcgagggaaggattttaacttggaattggcaattaaaacaaggattata
tctgatggtctaaaatactctttagctactggaaactggggtgatcaaaagaaagctcac
caagccagagctggagtatctcaggtattgaaccgcctgacttttgcgtctactctttct
caccttcgtcgtttaaattctcccattggtagagatggcaagctagcaaaaccaagacag
ttgcataatacattgtggggaatggtgtgtcctgctgagaccccagagggccatgctgta
ggacttgtgaagaatttagctctgatggcttatatttcagttggatctcaaccatctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcaaccaagattttcgttaatggctgctgggttggaatacataaagatcct
gaacaacttatgaacaccctaaggaaattgcggcgtcagatggacatcattgtgtctgaa
gtttctatgatcagagatattcgagaaagggagattcgtatctatacagacgcaggccgt
atttgtagaccacttctgattgtggaaaaacaaaagctccttttgaagaagagacatatt
gatcaattgaaagagagagaatataacaactacagttggcaggatcttgtggccagtggg
gtagtagaatatattgataccctcgaagaagaaacagtgatgcttgcaatgactccagat
gatttacaggagaaagaagtagcttattgttccacatacacacattgtgagattcatcct
tcaatgatccttggtgtctgtgcatctattattccctttcctgatcataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggagtttatattaccaacttc
catgtgcgtatggacacattggcccacgttctctattatcctcaaaaaccacttgtgacc
acgcggtctatggaatatctacgattcagagaactgccagcaggtatcaactcaattgtg
gccattgcatcatacactggttataatcaagaagactctgttatcatgaaccgttcagct
gtagaccgaggctttttcaggtctgttttctaccggtcttacaaagaacaggagtctaaa
aaaggattcgatcaagaagaagtttttgagaagcctacacgtgaaacatgtcagggtatg
agacatgccatttatgacaagctagatgatgatggtctgatagctcctggggttcgtgta
tcaggagatgatgttatcataggcaaaacagtcaccttgcctgaaaatgaagatgaattg
gagagcactaatagacgctataccaagagagactgtagcactttcctcagaacgagtgag
acgggtattgtggatcaggtgatggtaactctcaaccaggaaggatataaattttgtaaa
ataagggtacgctctgttagaattccacaaattggagacaaatttgctagtcgacatggt
cagaagggtacttgtggtattcagtataggcaagaggatatgcctttcacctgtgaaggt
atcacccctgatatcatcataaatccccatgccatcccttctcgtatgactattggtcac
ttgattgaatgtcttcaagggaaggtatcagccaacaagggtgaaattggtgatgccact
ccatttaatgatgctgttaatgtgcagaagatttctaaccttttatctgagtatggctac
catctcagaggaaatgaggtcctgtacaatgggtttactggtcgaaaaatcacatcacaa
atttttattggccccacttattaccagcgtttgaagcatatggtggatgataagattcat
tctcgtgctagaggacctattcagatccttaatagacagcctatggaaggtagatctcgt
gatggtggcctgcgttttggagaaatggaacgagattgtcagattgcccatggagcagcc
cagtttttaagagaacggttgtttgaggcatcagatccgtatcaggttcacgtttgcaat
ctgtgtggcataatggccattgctaacaccaggacccatacgtatgaatgcaggggctgc
cgcaataaaacccagatttccttggtgcgaatgccttatgcgtgcaaactgttgtttcag
gaacttatgtcaatgagtattgcacctcgaatgatgagtgtttag
DBGET
integrated database retrieval system
