Thermococcus pacificus: A3L08_00095
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Entry
A3L08_00095 CDS
T05192
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
tpaf
Thermococcus pacificus
Pathway
tpaf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tpaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
A3L08_00095 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpaf03021
]
A3L08_00095 (tfb)
Transcription machinery [BR:
tpaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
A3L08_00095 (tfb)
Prokaryotic type
Archaeal type
TFB
A3L08_00095 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Sigma70_r4
zf-ribbon_3
Cyclin_N
Zn_Tnp_IS1595
FYDLN_acid
LysW-like_globular
UPF0253
GerE
FtrD-like
HTH_AsnC-type
Ribosomal_S27e
Prim_Zn_Ribbon
HTH_Tnp_ISL3
Auto_anti-p27
ADK_lid
DZR
OrfB_Zn_ribbon
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
ASJ05844
UniProt:
A0A218P4Y4
LinkDB
All DBs
Position
complement(12940..13851)
Genome browser
AA seq
303 aa
AA seq
DB search
MADKRVCPVCGSTEFIYDPRRGEIVCAKCGYVLEENVIDEGPEWRAFDPDQRAKRARTGA
PMTLMIHDKGLSTDIDWRDKDIHGNQISGMYRNKLRRLRMWQRRMRINDAAERNLAFALS
ELDRMAAQMRLPRRVKEAAASLYRKAVMKKLIRGRSIEGMVSAALYAACRMEGIPRTLDE
IAAVSKVSKKEIGRSYRFMARGLNLNLRPTSPIEYVDRFGDALNVSARTKKRAKEILREA
IEKGITSGKGPTGLAAAALYVASLLEGEKKTQREVAEVAHVTEVTVRNRYKELVEKLGIN
VPI
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
ttggctgataagagggtgtgtccggtttgcggctcgaccgagtttatctatgacccgagg
aggggcgaaatcgtctgcgccaagtgcggctacgttcttgaggagaatgttattgatgaa
ggcccggagtggcgtgccttcgatcccgatcagagggccaagcgcgccagaaccggtgcg
cccatgacactgatgatccatgataaaggcctttccaccgatatcgactggcgtgataag
gacatacacggcaaccagataagcggtatgtacagaaacaagctgagaaggctccgcatg
tggcagaggaggatgcgcataaacgacgccgccgagaggaacctcgcctttgcattaagc
gagctcgacaggatggcggcccagatgcgccttccgaggcgtgttaaggaggcagccgct
tcactctacaggaaggctgtcatgaagaagctcatccgcggaaggtcgatagaggggatg
gtttctgccgctctttacgccgcctgcaggatggagggcattccgaggaccctcgacgag
atagcggccgtttcaaaggtctcgaagaaggagataggaaggagctaccgcttcatggcg
aggggcctgaacctcaacctccgccccacaagcccgatagagtacgttgaccgcttcggc
gatgcactcaacgtgagcgcgaggacgaagaaaagggcaaaggagatactgagggaggcc
atagagaagggcataacgagtgggaaaggtccgactggacttgctgcggccgctctgtac
gttgcatcgctccttgagggcgagaagaagacccagcgagaagttgcggaggttgcacac
gttactgaggtgaccgttagaaaccgctacaaggagcttgttgagaagctcggcataaac
gtcccgatatga
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