Treponema pallidum subsp. pallidum Mexico A: TPAMA_0003
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Entry
TPAMA_0003 CDS
T02273
Symbol
recF
Name
(GenBank) recombination protein F
KO
K03629
DNA replication and repair protein RecF
Organism
tpo
Treponema pallidum subsp. pallidum Mexico A
Pathway
tpo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TPAMA_0003 (recF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpo03400
]
TPAMA_0003 (recF)
DNA repair and recombination proteins [BR:
tpo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TPAMA_0003 (recF)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
RNA_helicase
AAA
AAA_29
zf-CDGSH
Motif
Other DBs
NCBI-ProteinID:
AFU66043
LinkDB
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Position
2623..3834
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AA seq
403 aa
AA seq
DB search
MKNRLRFLLRRRFKWNLPILQKHSRFVLYQTRTAFTSLCLCKRSDSLPFLTVTAINFRNL
AHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESELYATHARSNEYRVKV
MYRGEYTHTVQIFSKNGKKRIEKNLKKIRTKKELISSIPCILFFHNDLDFVVGTPERRRF
FLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRVQLLDALDTQIATVGFDLVQWRTQL
VRDFNVIFTKYYERLGDLAQVRIEYKPSWSDSSVEEIVHSLYKRRKHDLAMGMSMSGPHR
DKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVTGKLPVLLMDDVLLELDPEKR
ERFMMSLPPYDQLFCTFLPGEAYRRYGREKTRVYFVSEGACHE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaccgcttaaggtttttacttcgaaggaggttcaagtggaatttaccgatcctg
caaaagcactcacgcttcgtgctgtaccaaacacggactgctttcacatcattatgccta
tgcaaacggagtgattctttgccttttctcacagtgactgcaataaatttcagaaatctt
gcacatcacacgattgatatatcctctcctgaggttttttttgtgggaaataacggacag
ggaaaaaccaatatacttgaggttctatatcttgctgcgtacggaaattcgtttcgaaca
cgcaccgaaagcgaactgtatgcaactcacgcgcgttcgaatgagtatcgggtaaaagtt
atgtaccgcggggagtatacccacacagtgcagattttctccaaaaatggaaaaaagcgc
attgagaaaaacttgaaaaaaataaggacaaaaaaagaacttatcagcagtattccctgt
attttgttttttcataacgatttggacttcgtagttggtacgccagaacgcagacgcttc
tttttggatcaatccctttcgatgtgtaatcctctgtatttggaatacttgcaaaaatat
cacgcactaacaaaaacaaagaacagagagataaaagagaaacgcgttcagttactcgat
gcactggatacgcaaattgcaaccgtgggttttgatctcgtgcagtggagaactcagctt
gtccgtgactttaacgtgatttttactaagtattatgagcgccttggagaccttgcgcag
gtgcgcattgagtataagccttcatggtctgactcctcagttgaggagatcgtacattct
ctttacaagagacgtaagcacgatcttgcgatggggatgagtatgtcaggtcctcataga
gataagattcactttactcggtcgcaggcgcttttcattcctcaggcttctaccggacag
aggcggttggtttcgttggtactgaggatgtcgcaggctgtgttctacacaggagtaacg
ggaaaactgcccgtactcttaatggatgatgtcttgttagagcttgatcctgagaagcgg
gaaaggttcatgatgagtttgcctccgtatgatcagctgttttgtacatttttgccaggg
gaagcgtacaggcgatacgggcgtgaaaaaacgcgggtatattttgtttctgaaggggcg
tgtcatgaataa
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