KEGG   Tsukamurella paurometabola: Tpau_0201Help
Entry
Tpau_0201         CDS       T01228                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tpr  Tsukamurella paurometabola
Pathway
tpr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tpr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Tpau_0201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tpr03400]
    Tpau_0201
Enzymes [BR:tpr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tpau_0201
DNA repair and recombination proteins [BR:tpr03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Tpau_0201
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ADG76855
UniProt: D5UQM2
LinkDB All DBs
Position
complement(213125..215461)
Genome map
AA seq 778 aa AA seqDB search
MAQTRENREVDGVHVQLTNLDKVLYPATGTTKAEVIDYYQAIAPVAVPHLRDRPLTRKRW
PNGVDKTAFFEKRLPSHAPAWIRRGAQHHSDGESLYPVVENTADMVWLGQQAALELHVPQ
WTFIADGENEEPGPPDRLVLDLDPGPGSTLDDCAALALRIRDLLAAMGLDGHPVTSGSKG
MHIYSTLPGGLSSPGARKVAHAIASQLEAESPELVTASMSKDQRGGRIFVDWSQNSGSKT
TISPYSLRGREHPWVAAPRSWDELSRPGLQQLEFHDVLARVRTSGDLLAPLLSGTPAPPE
PVDLDEYRAKRDAAKTPEPFGGAASTGDPIFVIQEHHARRLHYDFRLEHDGVLASWAVPK
NLPDDPAVNHLAVRTEDHPMDYAAFEGSIPKGEYGGGDVSIWDHGTYELEKWRKDEVIVT
LHGARLRGLRYALIRTGEKNWLAHLTKDKTAPAKAAAAQAPDPMLPSESTIDRLSGEDWA
FEGKWDGYRIMATVRGGALSLRTRSGRVVTGEFPEFESLARDLDGMDVVLDGEAVVLDDA
GVPSFHLMAGGESRTGAVRLYLFDVLELNGVDLTKRPWSVRREVLESLAPLLDSDDSIGV
PALVEASTGLVAATLSAERGWEGIVAKRRDSPYLPGQRVRAWLKHKNWRDLQVAIGGWKP
GKGSRANRIGSVLVGLPAETGLVYLGSVGSGLRDRDLDALAQRLEPLRMKRSPFTASIDD
PDARDAVWVLPQVVGDVRYSSLRRGGHLRQPSWRGFRDDLLPGDLPGEAEIPWEGPDE
NT seq 2337 nt NT seq  +upstreamnt  +downstreamnt
gtggcgcagactcgggagaaccgtgaggtggacggcgtccacgtgcaactgaccaacctc
gacaaggtgctctacccggccaccggtaccacgaaggccgaggtgatcgactactaccag
gcgatcgcccccgtcgcggtcccccacctgcgcgaccggccgctcacccgcaaacgctgg
cccaacggcgtcgataaaaccgccttcttcgaaaagcgcctccccagccatgccccggcc
tggatccgccgcggcgcccagcaccactccgacggcgaatcgctctatcccgtggtcgag
aacacggccgatatggtgtggctgggacagcaagccgcgctcgagctccacgtaccgcag
tggacgttcatcgccgacggcgagaacgaggagccgggcccgcccgatcgcctggtcctc
gacctcgatcccggccccggcagcacgctcgacgattgcgccgcactcgcgctgcgcatc
cgcgatctgctcgcagccatgggactggacgggcacccggtcaccagcggctccaagggc
atgcacatctattcgaccttgcccggcggcctcagcagcccgggcgcgcggaaggtggcg
cacgccatcgcgtcccaactggaggccgagtcaccggaactggtgaccgcctccatgtcg
aaggaccagcgcgggggccgcatcttcgtggactggtcgcagaacagcggatccaagacc
acgatctcgccgtattcgctacgcgggcgcgagcatccgtgggtggcggcaccccgcagc
tgggacgaactgtcccggccgggcttgcagcagttggagttccacgacgtgctggcccgc
gtgcggacgagcggcgatctgctcgctccattgctctcgggcacaccggcaccgcccgag
ccggtcgacctcgacgaataccgggctaagcgcgatgccgcgaagacgccggaacccttc
ggcggcgcggcgagcacgggcgatccgatcttcgtgatccaggaacatcacgcgcgccgc
ctgcactacgacttccgcctggaacacgacggcgtactcgcttcctgggcggtgccgaag
aacctgcccgacgatcccgcggtgaaccacctggccgtgcgcaccgaggaccacccgatg
gactacgccgccttcgagggcagcatcccgaagggggagtacggcggcggcgatgtgagc
atctgggaccacggcacctacgaactggagaagtggcgcaaggacgaggtgatcgtcacg
ctgcacggcgcgcgactgcgcggactgcgctacgccctcatccgcacgggcgaaaagaat
tggctcgctcacctgaccaaggacaagaccgcaccggcgaaggccgcggcagcgcaagca
ccggatccgatgctgcccagcgaatccacgatcgaccggctctccggcgaggattgggcc
ttcgagggcaagtgggacggctaccggatcatggcgacggtgcgcggcggcgcgctgagc
ctgcgcacccgatcgggccgggttgtcaccggtgagttccccgaattcgagtcactggcc
cgcgatctcgacggaatggacgtggtcctcgacggtgaagctgtagtgctcgacgatgcg
ggcgtaccgtcgttccacctcatggcggggggcgagagccgtaccggcgcggtacggctc
tacctgttcgacgtcctcgaactgaacggtgtcgacctcaccaagcggccctggtcagtg
cggcgggaggtattggaaagtcttgcaccacttctagattccgacgactcgatcggcgtt
ccagcattggtcgaggcctccacgggactggtggccgcgaccctgagcgcggaacgggga
tgggaggggatcgtcgccaaacgtcgcgactcgccgtatctgcccggacagcgggtgcgg
gcctggctcaaacacaagaactggcgcgatctgcaggtggcgatcggcggctggaagccg
gggaagggttcgcgcgcgaaccggatcggatccgtcctggtgggtctgcccgcggagacc
ggtctggtctatctgggctcggtggggtcgggcttgcgcgaccgcgatctggacgcgctc
gcgcagcgactggaaccgctgcgaatgaagcgctccccgttcaccgcctccatcgacgat
ccggacgctcgcgatgccgtgtgggtgttgcctcaggtggtgggtgatgtccgctattcc
tcgctccgcaggggcgggcacctgcggcagcccagctggcgcggtttccgcgacgatctg
ctcccgggcgacctccccggcgaggcggagatcccgtgggaggggcccgacgaataa

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