Talaromyces rugulosus: TRUGW13939_04562
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Entry
TRUGW13939_04562 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K10755
replication factor C subunit 2/4
Organism
trg
Talaromyces rugulosus
Pathway
trg03030
DNA replication
trg03410
Base excision repair
trg03420
Nucleotide excision repair
trg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TRUGW13939_04562
03410 Base excision repair
TRUGW13939_04562
03420 Nucleotide excision repair
TRUGW13939_04562
03430 Mismatch repair
TRUGW13939_04562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trg03032
]
TRUGW13939_04562
03036 Chromosome and associated proteins [BR:
trg03036
]
TRUGW13939_04562
03400 DNA repair and recombination proteins [BR:
trg03400
]
TRUGW13939_04562
DNA replication proteins [BR:
trg03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
TRUGW13939_04562
DNA Replication Termination Factors
ELG1-RFC complex
TRUGW13939_04562
Chromosome and associated proteins [BR:
trg03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
TRUGW13939_04562
DNA repair and recombination proteins [BR:
trg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
TRUGW13939_04562
Check point factors
HRAD17(Rad24)-RFC complex
TRUGW13939_04562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
Sec20
AAA
DNA_pol3_delta2
Rad17
AAA_22
RuvB_N
SLFN-g3_helicase
AAA_16
AAA_11
AAA_19
AAA_assoc_2
Mg_chelatase
AAA_24
AAA_14
AAA_2
AAA_28
AAA_18
DNA_pol3_delta
AAA_7
AAA_5
bpMoxR
ArAE_2
Motif
Other DBs
NCBI-GeneID:
55992063
NCBI-ProteinID:
XP_035343627
LinkDB
All DBs
Position
II:join(6015725..6016044,6016124..6016371,6016425..6016989,6017044..6017071,6017136..6017356,6017426..6017504,6017564..6018397,6018448..6018609)
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AA seq
818 aa
AA seq
DB search
MSSSIHLLQTRLKEVSASLNEIKPLINRLRNFTHAVGQGDEARLELGAEIHSRLKIVEEE
TELLNVEVEVLEGAGSSKRKTSDNSEKEAEKKRVIGLVAKLTTDLKKVRGDFRGAQLQAN
RNAETARRKERELLFTRSKDDKDRQVPSEKFTQNDLVTNASSDVTAALRRTHELMQAELS
RSQFAQETLEQSTAALSSLSESYSSLDTVLSSSRALVNSLLRSQKSDTWYLETAFYILIG
TIAWLVFRRILYGPMWWLAWMPVRTLYRLFASVLGVASVSGAVTTTSAIVSGTQTSAIPT
GTAATVSLEGENAPVMETPDSRRDKEEQDDSVVDQLGKMGETDSANAGHDNEAYEDYDGP
RNPQKRTWEEDITRKDELLVPDREVIVLSCNPSTLTTHLHDLDLNRTSTHTLKLILILTR
SMAANFFNNKARAAAAATSSKQKPTDSKGDQTRLQPWVEKYRPKSLDDVAAQDHTTAVLQ
RTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRTRILELNASDERGISIVREKI
KDFARTQLSQPTGLDAAYREQYPCPPFKIIILDEADSMTHDAQSALRRTMEQYSRITRFC
LVCNYVTRIIEPLASRCSKFRFKMLDGVAAGDRLQEIAKAENLVLENGTLETLIKCSEGD
LRRAITYMQSAARLVGQKQQQQQQQQQQQQQGGDEGDVEMADADSSSVITIKTVEEIAGV
VPDSVLDRLTQAMQPKKLGSAYEAVAAVVSDIVADGWSATQIVSQLYYRVVFNDAIPDIQ
KNRIVTVFSEMDKRLVDGSDEHLSILDLVLRISGILGS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctctatccacctcctccagactcgcctcaaagaagtatcggcctctctcaac
gagatcaaacctctgatcaaccgactcaggaacttcacccatgctgtcggacagggtgac
gaagctcgcctggaactgggcgccgagatccactcgagactcaaaatcgtcgaagaagaa
accgaactgttgaacgtcgaggtcgaggtcttggaaggcgcaggaagttcgaagaggaaa
accagcgataattcagagaaggaagccgagaagaaacgtgttattggtcttgtcgcaaag
ttgactaccgacttgaaaaaagttagaggagactttcgaggcgcccaacttcaagccaac
cgcaatgcagagaccgcacgccgaaaagagcgagaattgctattcacgcggtcgaaagat
gacaaggaccgtcaagtcccgtcagaaaaattcacacagaacgacctcgtcacgaacgca
tcgtctgatgtcacagcggctctacggagaacacacgagctcatgcaggccgagctgtcg
cgaagtcaatttgcccaggaaacattagaacaatcgacggcagcgctttcctctctctcc
gagtcgtactccagtctcgataccgtcctatcctcctctcgagctctagtaaactcgctc
ctgcggtctcaaaagtcagacacgtggtatcttgaaacggccttttacattctgataggg
accatcgcatggctggtattccgaagaattctctacggaccgatgtggtggcttgcatgg
atgccggttaggacgctctataggctttttgcatctgtccttggtgtggcaagtgtctcc
ggggctgttactacgacttctgcgattgtcagcggcacacagacgtcagcaatacctact
ggtacggcagcgacggtgtcactggaaggagagaatgcgccagtaatggagaccccagac
tcaaggcgcgataaggaggagcaggatgacagtgtggtagaccaacttggcaagatgggt
gaaacagacagcgcgaacgcaggccacgacaacgaagcatacgaagattatgatggaccg
cggaatccacagaaaaggacgtgggaggaagatataacgagaaaagacgagctacttgtt
ccggatcgggaagtgatagtgctgtcttgcaacccctcaacactcaccactcacctccac
gacctcgatttgaatcgcacatctacgcatacgttgaagttgatattgatattgacacga
tcaatggctgcgaatttctttaataacaaagctagagctgcggctgcggcaaccagctcc
aagcaaaagccaacagacagcaagggagaccaaacacggttgcagccatgggttgagaaa
taccgcccaaaatcgcttgacgacgtcgcagcgcaagatcacaccaccgccgttctccaa
cggacactacaagcctccaaccttcctcacatgctgttttatggcccaccaggcaccggc
aaaacatccacaatcctcgctctggccaaatccctcttcggtcccgccctataccgcaca
cgtattctcgaactgaatgcctctgacgaacgaggtatcagtattgtccgagagaagatc
aaggactttgcgcgcacccaactctcgcagcccaccggtttagatgccgcctaccgcgaa
cagtatccatgcccgccattcaagatcatcatcctcgacgaggccgatagtatgacacac
gacgcccagtctgcgctgcgccggacgatggaacaatacagtcgaatcacacgtttctgt
cttgtgtgcaactacgtgacaagaatcatcgagccgctggctagtcggtgcagcaaattt
cgcttcaagatgctagacggtgtcgctgcgggagaccggttgcaggaaatcgcaaaggcc
gaaaatctggtcctggagaatggtacactggaaacgctgatcaagtgcagcgagggagat
ctgcggcgtgcaatcacgtatatgcaaagtgcggccagactcgttggacagaaacagcag
cagcaacaacaacaacaacaacaacaacaacaaggtggagacgagggtgatgttgaaatg
gcagatgcggattcatcttcggtaattacgattaaaacggtcgaggagattgctggtgtg
gtcccggatagcgtgcttgaccggttaacgcaagcaatgcagccgaaaaagctaggatca
gcgtatgaggctgtggcagcagttgtgtcagacattgtggccgatgggtggagtgctacg
cagattgtatcccagctatactaccgagtcgtcttcaacgatgccattccagatattcaa
aaaaaccggattgtcacagtcttttccgaaatggacaagaggctagttgatggctcagat
gaacacctttcgattctggatctggtactgaggatctcgggaattctgggttcatga
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integrated database retrieval system
