Thermococcus radiotolerans: A3L10_02220
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Entry
A3L10_02220 CDS
T05177
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
trl
Thermococcus radiotolerans
Brite
KEGG Orthology (KO) [BR:
trl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
trl03016
]
A3L10_02220
Enzymes [BR:
trl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3L10_02220
Transfer RNA biogenesis [BR:
trl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3L10_02220
Prokaryotic type
tRNA splicing ligases
A3L10_02220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ14003
UniProt:
A0A2Z2N0A3
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All DBs
Position
403461..404900
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AA seq
479 aa
AA seq
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MVPLKRIDKIRWEIPKYDKRMRVPGRVYADDQLIEKMRGDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLTEKEVRPKIKELVD
TLFRNVPSGLGSKGRVRLHWTQLDDVLADGAKWAVDNGYGWKEDLEHLEEGGRMEGANPG
AVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFDEKIAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRIMEKANRKYGVPWPDRELVSVPFQTEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMSIVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHP
DVPRAYRDVGQPVLIPGSMGTASYVLAGAEGSMRETFGSTCHGAGRLMSRHAATRQYRGD
RLRSELLQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHQAGIANLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgctgaagaggatagataaaatacgctgggagataccgaagtacgacaagaga
atgcgcgttccgggcagagtttacgctgacgaccagctgatagagaagatgaggggagac
agaacccttgagcaggccgccaacgttgcgatgctccccggcatctacaagtactccatc
gtcatgcccgacggtcatcagggctacggcttcccgatcggtggtgttgcagccttcgac
gtgaaggaaggcgtcataagccccggaggagtgggttacgacatcaactgcggtgtcagg
cttataaggacgaacctcaccgagaaggaagtgagaccgaagataaaggagctcgttgac
actctcttcaggaacgtgccgagcggtctgggaagcaagggaagagtaaggctccactgg
acgcagctcgacgatgttctggcggacggtgccaagtgggccgtcgataacggctacggc
tggaaggaggacctcgagcaccttgaggaaggcggaaggatggaaggggcgaatccagga
gcagttagtcagaaggcgaagcagaggggagcgccgcagctcggttccctcggctccgga
aaccacttcctcgaggttcaggtcgttgacaaaatcttcgacgaaaagatagctaaagcg
tatggcctctttgaggggcaggtcgttgtcatggttcacaccggaagcaggggtctcggc
caccaagtggcgagcgactacctcaggataatggagaaggccaacaggaagtacggtgtg
ccttggcccgatcgcgagcttgtcagcgttcccttccagaccgaggaagggcagaggtac
ttcagcgcgatgaaggccgccgccaactttgcctgggccaacaggcagatgataacccac
tgggtcagggagtcctttgaagaggtcttcaagaggaaagcggaagacatggagatgagc
atcgtttacgatgtggcgcacaacatagccaaggttgaggagcacgaggtcgacggaagg
aaggtcaaggtcgtggttcacaggaagggagcgacgagggcattccctgccggacacccc
gacgtgccgagggcctaccgtgacgtcggtcagccggttctgattccaggctcgatggga
acggcgagctacgtccttgccggtgcggagggttccatgagggagaccttcggttcaacg
tgccacggagccggaaggctgatgagcaggcatgccgcaaccaggcagtaccgcggcgac
aggctgaggagcgagctcctccagaggggaatctacgtccgcgcggcttcgctgagggta
gttgcagaggaggcccctggagcctacaagagcgtcgacaacgttgtgaacgtcgtccat
caggcaggcatagcgaacctcgtggcgagaatgcgcccgatgggagttgccaagggctga
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